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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01312
  • pan locus tag?: SAUPAN003688000
  • symbol: SAOUHSC_01312
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01312
  • symbol: SAOUHSC_01312
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1256491..1257222
  • length: 732
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGATACTAAGTTACTTGAAAATCGAATTTAAAGTTATAATGCGTAAAAAAACAACATTA
    ATATTATCTATTTTATTTCCTGTTATATTCTATATATTATTTACTTCGATATTGGAATTG
    CCGGAAGATGTTAAACCTAAATTTTATAAAGAGTATATGTATAGTATGACGGTTTATAGT
    TTGTTAAGTTTTAGTTTACTAACTTTTCCATTAGATATTATTAATGAAAAACAAAATGAA
    TGGCGCCAAAGATTAATGGTAACACCATTTACTTTTACTAGTTATTATATTTCAAAAGTA
    GTGAAAACTATGCTGCAATTTGCAATAGCGATATTAGTTATTTTTATGGTTGGACATTTT
    TATAAAGGTGTTGCAATGAGTGCAGTTCAATGGTTAGAGTCAGGAATATTTTTATGGTTA
    GGTGCGTCTCTATTAATAACTTTTGGCATATTATTTTCTTTGTTAAATGATATTCAAAAA
    ACAAGTGCTTTAGCTAATATCGTAACAATTGGTTTAGCAGTATTAGGTGGATTGTGGTTT
    CCGATAAACACATTTCCAAATTGGCTTCAACATGTTGCTCATGTTTTACCGAGCTATCAT
    TTGCGTAAACTAGGTGTAGATATTGCTTCAAATCATCATATCAATTTAATATCATTTGCT
    ATAATACTCTTGTATGCTTTAGGGAGTATAATAGCAGTATATTGTATTAGTCATTTTAAA
    AGGGCGGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    732

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01312
  • symbol: SAOUHSC_01312
  • description: hypothetical protein
  • length: 243
  • theoretical pI: 9.7801
  • theoretical MW: 27918.3
  • GRAVY: 0.753498

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter membrane protein (TIGR01247; HMM-score: 26.3)
    ABC transporter efflux protein, DrrB family (TIGR00025; HMM-score: 25.3)
    and 3 more
    Unclassified Role category not yet assigned daunorubicin resistance protein C (TIGR01248; HMM-score: 17.8)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 6.3)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 2.1)
  • TheSEED  :
    • ABC transporter permease protein
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 62.7)
    ABC2_membrane; ABC-2 type transporter (PF01061; HMM-score: 50.6)
    and 4 more
    ABC2_membrane_4; ABC-2 family transporter protein (PF12730; HMM-score: 20.1)
    ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 19.2)
    no clan defined TctB; Tripartite tricarboxylate transporter TctB family (PF07331; HMM-score: 14)
    IncD; Inclusion membrane protein D (PF17628; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006567
    • TAT(Tat/SPI): 0.000157
    • LIPO(Sec/SPII): 0.003229
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYSLLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHFYKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWFPINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYALGSIIAVYCISHFKRAE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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