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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004470000
- symbol?: sigS
- synonym:
- description?: RNA polymerase sigma factor SigS
- RNA polymerase sigma factor SigS
- RNA polymerase sigma-70 family protein
- RNA polymerase sigma factor
- DNA-binding protein
- DNA-directed RNA polymerase sigma subunit RpoE
- ECF subfamily RNA polymerase sigma-24 factor
- igma-70 family RNA polymerase sigma factor
- putative DNA-binding protein
- RNA polymerase, sigma-24 subunit, ECF subfamily
- RNA Polymerase Binding Factor sigS
- RNA polymerase factor sigma-70
- RNA polymerase sigma-70
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4715003..4715949
- synteny block?: BlockID0034660
- occurrence?: in 94% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1732
08BA02176:
C248_1822 (sigS)
11819-97:
MS7_1779 (sigS)
6850:
RSAU_001632 (sigS)
71193:
ST398NM01_1827
ECT-R 2:
ECTR2_1613
ED133:
SAOV_1761
ED98:
SAAV_1787
HO 5096 0412:
SAEMRSA15_16860
JH1:
SaurJH1_1864
JH9:
SaurJH9_1829
JKD6008:
—
JKD6159:
SAA6159_01698
LGA251:
SARLGA251_16640
M013:
—
MRSA252:
SAR1859
MSHR1132:
SAMSHR1132_16240
MSSA476:
SAS1700
Mu3:
SAHV_1762
Mu50:
SAV1777
MW2:
MW1717
RF122:
SAB1635
ST398:
SAPIG1827
T0131:
SAT0131_01892
TCH60:
HMPREF0772_11378
TW20:
SATW20_17670
USA300_TCH1516:
USA300HOU_1766 (rpoE1)
VC40:
SAVC_08100
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL --------------------------MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
N315 --------------------------MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
NCTC8325 --------------------------MKFNDVYNKHQKIIHYLLKKYNISYNYDEYYQLL
Newman --------------------------MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
USA300_FPR3757 MNDFSKYFILTLSGNICYTYNLENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLL
:*********:****:******************
COL LIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
N315 LIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
NCTC8325 LIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
Newman LIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
USA300_FPR3757 LIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTY
****************************:*******************************
COL FNEHDLRLQDIFKLLNQRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
N315 FNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
NCTC8325 FNEHDLRLQDIFKLLNQRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
Newman FNEHDLRLQDIFKLLNQRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
USA300_FPR3757 FNEHDLRLQDIFKLLNQRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHN
****************:*******************************************
COL FN
N315 FN
NCTC8325 FN
Newman FN
USA300_FPR3757 FN
**