PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004939000
• symbol^?: scpA
• synonym:
• description^?: staphopain A

  descriptions from strain specific annotations:

  • staphopain A
  • staphopain thiol proteinase
  • cysteine protease precursor SspB
  • cysteine protease staphopain A
  • cysteine proteinase staphopain A
  • staphopain, cysteine proteinase
  • C47 family staphopain protease
  • cysteine protease SspB
  • staphopain A (Staphylopain A) (Staphylococcalcysteine proteinase A)
  • Staphopain A precursor
  • staphopain cysteine proteinase
  • staphopain peptidase C47 family protein
• strand^?: +
• coordinates^?: 5129546..5130712
• synteny block^?: BlockID0038440
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1970 (sspB2)
N315:
SA1725
NCTC8325:
SAOUHSC_02127
Newman:
NWMN_1847 (sspB)
USA300_FPR3757:
SAUSA300_1890
04-02981:
SA2981_1866
08BA02176:
C248_1984
11819-97:
MS7_1944 (sspP)
6850:
RSAU_001796 (sspA)
71193:
ST398NM01_2003
ECT-R 2:
ECTR2_1781
ED133:
SAOV_2011
ED98:
SAAV_1975 (sspB2)
HO 5096 0412:
SAEMRSA15_18160
JH1:
SaurJH1_1998
JH9:
SaurJH9_1964
JKD6008:
SAA6008_01930 (sspB2)
JKD6159:
SAA6159_01840
LGA251:
SARLGA251_17940 (scpA)
M013:
M013TW_1946
MRSA252:
SAR2001
MSHR1132:
—
MSSA476:
SAS1832
Mu3:
SAHV_1894
Mu50:
SAV1909
MW2:
MW1850
RF122:
SAB1845
ST398:
SAPIG2003
T0131:
SAT0131_02036
TCH60:
HMPREF0772_11233 (sspB)
TW20:
SATW20_19040 (scpA)
USA300_TCH1516:
USA300HOU_1910
VC40:
SAVC_08805

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKRNFPKLIALSLIFSLSVTPIANAESNSNIKAKDKKHVQVNVEDKSVPTDVRNLAQKDY
  N315            MKRNFPKLIALSLIFSLSVTPIANAESNSNIKAKDKKHVQVNVEDKSVPTDVRNLAQKDY
  NCTC8325        MKRNFPKLIALSLIFSLSVTPIANAESNSNIKAKDKKHVQVNVEDKSVPTDVRNLAQKDY
  Newman          MKRNFPKLIALSLIFSLSVTPIANAESNSNIKAKDKKHVQVNVEDKSVPTDVRNLAQKDY
  USA300_FPR3757  MKRNFPKLIALSLIFSLSVTPIANAESNSNIKAKDKKHVQVNVEDKSVPTDVRNLAQKDY
                  ************************************************************
  
  COL             LSYVTSLDKIYNKEKASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITK
  N315            LSYVTSLDKIYNKEKASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITK
  NCTC8325        LSYVTSLDKIYNKEKASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITK
  Newman          LSYVTSLDKIYNKEKASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITK
  USA300_FPR3757  LSYVTSLDKIYNKEKASYTLGEPFKIYKFNKKSDGNYYFPVLNTEGNIDYIVTISPKITK
                  ************************************************************
  
  COL             YSSSSSKYTINVSPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKL
  N315            YSSSSSKYTINVSPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKL
  NCTC8325        YSSSSSKYTINVSPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKL
  Newman          YSSSSSKYTINVSPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKL
  USA300_FPR3757  YSSSSSKYTINVSPFLSKVLNQYKDQQITILTNSKGYYVVTQNHKAKLVLKTPRLEDKKL
                  ************************************************************
  
  COL             KKTESIPTGNNVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAG
  N315            KKTESIPTGNNVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAG
  NCTC8325        KKTESIPTGNNVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAG
  Newman          KKTESIPTGNNVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAG
  USA300_FPR3757  KKTESIPTGNNVTQLKQKASVTMPTSQFKSNNYTYNEQYINKLENFKIRETQGNNGWCAG
                  ************************************************************
  
  COL             YTMSELLNATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNR
  N315            YTMSALLNATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNR
  NCTC8325        YTMSELLNATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNR
  Newman          YTMSELLNATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNR
  USA300_FPR3757  YTMSELLNATYNTNKYHAEAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNR
                  **** *******************************************************
  
  COL             MTTYNEVDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNSWDNG
  N315            MTTYNEVDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNPWDNG
  NCTC8325        MTTYNEVDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNPWDNG
  Newman          MTTYNEVDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNSWDNG
  USA300_FPR3757  MTTYNEVDNLTKNNKGIAVLGSRVESRNGMHAGHAMAVVGNAKLDNGQEVIIIWNPWDNG
                  *******************************************************.****
  
  COL             FMTQDAKNNVIPVSNGDHYRWYSSIYGY
  N315            FMTQDAKNNVIPVSNGDHYRWYSSIYGY
  NCTC8325        FMTQDAKNNVIPVSNGDHYRWYSSIYGY
  Newman          FMTQDAKNNVIPVSNGDHYRWYSSIYGY
  USA300_FPR3757  FMTQDAKNNVIPVSNGDHYRWYSSIYGY
                  ****************************