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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005595000
- symbol?: cobB
- synonym:
- description?: NAD-dependent deacetylase
- NAD-dependent deacetylase
- NAD-dependent protein deacylase
- Sir2 family NAD-dependent deacetylase, putative
- sir2 family protein
- NAD-dependent protein deacetylase of SIR2 family
- NAD-dependent deacetylase (Regulatory protein SIR2homolog)
- Sir2 family NAD-dependent deacetylase
- Sir2 family transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5733550..5734290
- synteny block?: BlockID0043550
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2135
08BA02176:
C248_2236
11819-97:
MS7_2220
6850:
RSAU_002041 (npdA)
71193:
ST398NM01_2257
ECT-R 2:
ECTR2_2058
ED133:
SAOV_2244
ED98:
SAAV_2258
HO 5096 0412:
SAEMRSA15_21020
JH1:
SaurJH1_2267
JH9:
SaurJH9_2228
JKD6008:
SAA6008_02238
JKD6159:
SAA6159_02108
LGA251:
SARLGA251_19920
M013:
M013TW_2165
MRSA252:
SAR2288
MSHR1132:
SAMSHR1132_20290
MSSA476:
SAS2098
Mu3:
SAHV_2181
Mu50:
SAV2197
MW2:
MW2123
RF122:
SAB2078
ST398:
SAPIG2257
T0131:
SAT0131_02372
TCH60:
HMPREF0772_10994
TW20:
SATW20_23350
USA300_TCH1516:
USA300HOU_2190
VC40:
SAVC_09875
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---MKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLS
N315 ---MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLS
NCTC8325 MFNLKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLS
Newman ---MKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLS
USA300_FPR3757 ---MKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLS
:::******************************************************
COL RDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQSLGIITQNIDGLHSDAGSQ
N315 RDYLEDDPEGFINFCHKRLLFVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQ
NCTC8325 RDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQ
Newman RDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQ
USA300_FPR3757 RDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQ
************************ *******************:***************
COL HVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRA
N315 HVDELHGTLNRFYCNACHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRA
NCTC8325 HVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRA
Newman HVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRA
USA300_FPR3757 HVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRA
***************.********************************************
COL LNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVV
N315 LNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVV
NCTC8325 LNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVV
Newman LNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVV
USA300_FPR3757 LNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVV
************************************************************
COL KSLMTE
N315 KSLMTE
NCTC8325 KSLMTE
Newman KSLMTE
USA300_FPR3757 KSLMTE
******