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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0442 [new locus tag: SAUSA300_RS02365 ]
  • pan locus tag?: SAUPAN002183000
  • symbol: SAUSA300_0442
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0442 [new locus tag: SAUSA300_RS02365 ]
  • symbol: SAUSA300_0442
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 494325..495107
  • length: 783
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATGCTGTATTTATATTGGCGTTATTGCTCCTCTTTCTGATGATAATTTTCGGAGGT
    AAAAAGGGATTCATCTCTTATTTAACCCTATTTTTAAATTTCGCTATTTTAATTATTAGT
    ATTGTATTGATTATTTTTGGCGTACCGATTTATGTCGTCACATTCTTTTTCTGCATTATT
    ATTGGCGCTTGTAATTTATTCGTACTCAATAGTTACAATGTTAAAACACAAGCTGCATTT
    ATCAGCACTATCGTTACAACAATATTGTTGATTACACTCATTTATTTATCGGTCTACTTC
    GGTCATCTACAAGGCTTTTCAACCGAACAACAAGATGAAACATATGTGTATTCAATGAAT
    ATTGGCATTGATATGGTTCAATTTATGGTGTTCACTATTATTCTTGCTGTTATTGCAGCT
    GTGATAGATTTAACAATTACCATTAGTTCACCCATTTATGAATTGCATCAAGTGAATCCA
    ACGCTTACGCAATACGAATTATTCCAATCTGGCATGCGTGTTGGTAGAGAAATTTTAGCG
    ACATCTGCGAACACGATTTACCTTGCCTTTTTTGGTGGCCAACTTGCTTTATTTATTTGG
    TTTTTCAAACTTAAATATTCATTTGGTCATATTATAAACTCGAAAATATTTGCCCAAGAA
    TTTATTTCTATTATTTTAGGCGGTATTGCCGTTGCAATCAGTATTCCGATTACGGCTTGG
    ATTACGGCATTTTTAATAAAAAGACCATCTCGACAGCGCAAAAATGATGAGTCTATCAAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0442 [new locus tag: SAUSA300_RS02365 ]
  • symbol: SAUSA300_0442
  • description: hypothetical protein
  • length: 260
  • theoretical pI: 8.60806
  • theoretical MW: 29231.7
  • GRAVY: 1.03808

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Integral membrane protein SERP0105
  • PFAM:
    no clan defined YibE_F; YibE/F-like protein (PF07907; HMM-score: 225.4)
    and 1 more
    HPIH; N-terminal domain with HPIH motif (PF13323; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane(Lipid modified N-termini)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: IIGACNL
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003371
    • TAT(Tat/SPI): 0.00014
    • LIPO(Sec/SPII): 0.109883
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCIIIGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMNIGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILATSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAWITAFLIKRPSRQRKNDESIN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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