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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0427 [new locus tag: SA_RS02430 ]
  • pan locus tag?: SAUPAN002183000
  • symbol: SA0427
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA0427 [new locus tag: SA_RS02430 ]
  • symbol: SA0427
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 487587..488369
  • length: 783
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATGCTGTATTTATATTGGCGTTATTGCTCCTCTTTCTGATGATAATTTTCGGAGGT
    AAAAAGGGATTCATCTCTTATTTAACCCTATTTTTAAATTTCGCTATTTTAATTATTAGT
    ATTGTATTGATTATTTTTGGCGTACCGATTTATGTCGTCACATTCTTTTTCTGCATTATT
    ATTGGCGCTTGTAATTTATTCGTACTCAATAGTTACAATGTTAAAACACAAGCTGCATTT
    ATCAGCACTATCGTTACAACAATATTGTTGATTACACTCATTTATTTATCTGTCTACTTC
    GGTCATCTACAAGGCTTTTCAACCGAACAACAAGATGAAACATATGTGTATTCAATGAAT
    ATTGGCATTGATATGGTTCAATTTATGGTGTTCACTATTATTCTTGCTGTTATTGCAGCT
    GTGATAGATTTAACGATTACCATTAGTTCACCCATTTATGAATTGCATCAAGTAAATCCA
    ACACTTACGCAATACGAATTATTCCAATCTGGCATGCGTGTTGGTAGAGAAATTTTAGCG
    ACATCTGCGAACACGATTTACCTTGCCTTTTTTGGTGGCCAACTTGCTTTATTTATTTGG
    TTTTTCAAACTTAAATATTCATTTGGTCATATTATAAACTCGAAAATATTTGCCCAAGAA
    TTTATTTCTATTATTTTAGGCGGTATTGCCGTTGCAATCAGTATTCCGATTACGGCTTGG
    ATTACGGCATTTTTAATAAAAAGACCATCTCGACAGCGCAAAAATGATGAGTCTATCAAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA0427 [new locus tag: SA_RS02430 ]
  • symbol: SA0427
  • description: hypothetical protein
  • length: 260
  • theoretical pI: 8.60806
  • theoretical MW: 29231.7
  • GRAVY: 1.03808

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Integral membrane protein SERP0105
  • PFAM:
    no clan defined YibE_F; YibE/F-like protein (PF07907; HMM-score: 225.4)
    and 1 more
    HPIH; N-terminal domain with HPIH motif (PF13323; HMM-score: 11.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane(Lipid modified N-termini)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: IIGACNL
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003371
    • TAT(Tat/SPI): 0.00014
    • LIPO(Sec/SPII): 0.109883
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCIIIGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMNIGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILATSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAWITAFLIKRPSRQRKNDESIN

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]