From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000401
  • pan locus tag?: SAUPAN002183000
  • symbol: JSNZ_000401
  • pan gene symbol?: —
  • synonym:
  • product: YibE/F family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000401
  • symbol: JSNZ_000401
  • product: YibE/F family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 429389..430171
  • length: 783
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATGCTGTATTTATATTGGCGTTATTGCTCCTCTTTCTGATGATAATTTTCGGAGGT
    AAAAAGGGATTCATCTCTTATTTAACCCTATTTTTAAATTTTGCTATTTTAATTATTAGT
    ATTGTATTGATTATTTTTGGCGTACCGATTTATGTCGTCACATTCTTTTTCTGCATTATT
    ATTGGCGCTTGTAATTTATTCGTACTCAATAGTTATAATGTTAAAACACAAGCTGCATTT
    ATCAGCACTATCGTTACAACAATATTGTTGATTACACTCATTTATTTATCGGTCTACTTC
    GGTCATCTACAAGGCTTTTCAACCGAACAACAAGATGAAACATATGTGTATTCAATGAAT
    ATTGGCATTGATATGGTTCAATTTATGGTGTTCACTATTATTCTTGCTGTTATTGCAGCT
    GTGATAGATTTAACGATTACCATTAGTTCACCCATTTATGAATTACATCAAGTGAATCCA
    ACACTTACGCAATACGAATTATTCCAATCTGGCATGCGTGTTGGTAGAGAAATTTTAGCG
    ACATCTGCGAACACGATTTACCTTGCCTTTTTTGGTGGCCAACTTGCTTTATTTATTTGG
    TTTTTCAAACTTAAATATTCATTTGGTCATATTATAAACTCGAAAATATTTGCCCAAGAA
    TTTATTTCTATTATTTTAGGCGGTATTGCCGTTGCAATCAGTATTCCGATTACGGCTTGG
    ATTACGGCATTTTTAATAAAAAGACCATCTCGACAGCGCAAAAATGATGAGTCTATCAAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000401
  • symbol: JSNZ_000401
  • description: YibE/F family protein
  • length: 260
  • theoretical pI: 8.60806
  • theoretical MW: 29231.7
  • GRAVY: 1.03808

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9999
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003371
    • TAT(Tat/SPI): 0.00014
    • LIPO(Sec/SPII): 0.109883
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCIIIGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMNIGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILATSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAWITAFLIKRPSRQRKNDESIN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_000401&oldid=106042"