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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1864 [new locus tag: SAUSA300_RS10180 ]
  • pan locus tag?: SAUPAN004898000
  • symbol: SAUSA300_1864
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1864 [new locus tag: SAUSA300_RS10180 ]
  • symbol: SAUSA300_1864
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2024254..2025471
  • length: 1218
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCGAAAAAGGATCACTCTTCTTCAAAATACCTTAATTCTGTTAAGGAAGCGCAAGAG
    GAGTCAAAAAAGAAAAATAAAAGTAATCCCAAAATTGATGTTGATCGTACATATATTGAA
    CCTCAACAATTCCAATCTAAGAAACCTAAAAAAGATGATCAGGTTTTCTTCTTATCAAGA
    TTAAATAAACCTGCAAAATATAAGAAAGACTCTAATTTCTTATCATATCTCATCTATCGC
    ATAGGAAAAGATGATGCCTCAGGACTAGCAGCACAAATGACTTACCATTTCGTACTTGCT
    ATGTTCCCTATGTTGCTTTTCCTATTAACATTATTACCATTTTTCAATATTAAGCAGAGT
    CAAATTACTAATATGTTAAGCAATGCACCCGCTGAAACATCTACTCTAATTAAGAGTGTA
    ATTGGTGATATAACTCAAAACTCCAGTGGTGGCTTATTATCTATCGGTTTGATTTTAGCA
    ATTTGGTCAGCTTCAAATGGAATGACTGCAATTATGAATTCTTTCAATGTTGCTTACGAT
    GTAGAAGATAGCCGTAATGGAATCGTATTAAAACTACTAAGTGTTGTCTTCACTGTAGTT
    ATGGGCGTTGTGTTTGTAGTTGCTCTAGCATTACCAACGCTTGGTTCTGTAATTAGTCAT
    TTCCTATTCGGTCCACTTGGATTTGACGAACAAGTGAAATGGATTTTTAACCTTATTAGA
    ATTGTGTTACCAATCATTATTATATTTATCATATTTATCGTGTTATATTCGGTTGCACCT
    AACGTTAAAACGAAGCTTAAGTCAGTATTACCAGGTGCAGTATTTACTTCAATTATTTGG
    TTAGCTGGTTCATTTGGTTTTGGTTGGTATATTTCAAATTTTGGTAACTATTCTAAAACA
    TATGGCAGTATCGCGGGTATCATCATTTTGTTACTATGGTTATATATCACAAGTTTTATT
    ATAATTGTCGGTGCTGAAATCAATGCAATCATTCATCAGCGTAGTGTAATTAAAGGTAAA
    ACACCTGAAGAAGCAGCATTAGAACATGATGACAATAATAAAAATCATTATAATGAGAAC
    ACTAGATACGAATATGATGAAGATAGTAATGCAACACATCAACGTACGTATCATGTTGAT
    GAACATCCTAGTGATACCTATCCAGAAGATGATAAAAATATAAAAGACAAAATCGTTGAT
    AAGCTTAAAAAAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1218

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_1864 [new locus tag: SAUSA300_RS10180 ]
  • symbol: SAUSA300_1864
  • description: hypothetical protein
  • length: 405
  • theoretical pI: 9.26901
  • theoretical MW: 45604.4
  • GRAVY: 0.0162963

Function[edit | edit source]

  • TIGRFAM:
    Unknown function General YihY family inner membrane protein (TIGR00765; HMM-score: 165.5)
    and 1 more
    Genetic information processing Transcription Degradation of RNA inner membrane protein YhjD (TIGR00766; HMM-score: 33.6)
  • TheSEED:  
    Clustering-based subsystems D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster CBSS-342610.3.peg.283  Ribonuclease BN (EC 3.1.-.-)
    and 3 more
    RNA Metabolism RNA processing and modification tRNA processing  Ribonuclease BN (EC 3.1.-.-)
    CBSS-176280.1.peg.1561  Ribonuclease BN (EC 3.1.-.-)
    LMPTP YfkJ cluster  Ribonuclease BN (EC 3.1.-.-)
  • PFAM:
    no clan defined Virul_fac_BrkB; Virulence factor BrkB (PF03631; HMM-score: 234.3)
    and 2 more
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 11.5)
    Oxa1 (CL0376) 60KD_IMP; 60Kd inner membrane protein (PF02096; HMM-score: 10.4)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015037
    • TAT(Tat/SPI): 0.002293
    • LIPO(Sec/SPII): 0.002907
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

  • SAUSA300_1864 no polycistronic organisation predicted

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]