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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2286 [new locus tag: SAUSA300_RS12635 ]
  • pan locus tag?: SAUPAN005831000
  • symbol: SAUSA300_2286
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2286 [new locus tag: SAUSA300_RS12635 ]
  • symbol: SAUSA300_2286
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2458456..2458782
  • length: 327
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTATATCCGATTTTTATATTTATATTAGCTGGCTTATGTGAAATAGGTGGGGGATAC
    CTGATTTGGCTGTGGCTTAGGGAAGGACAGTCTTCACTTGTTGGGCTAATAGGCGGTGCG
    ATACTCATGTTATATGGTGTCATTGCGACATTTCAATCATTTCCATCATTCGGAAGAGTA
    TATGCAGCATATGGTGGCGTATTTATCATCATGAGTTTGATTTTTGCGATGGTCGTAGAT
    AAACAAATGCCAGATAAATATGATGTTATCGGTGCAATCATTTGTATTGTAGGTGTTTTA
    GTAATGTTGCTACCCAGCAGAGCTTGA
    60
    120
    180
    240
    300
    327

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2286 [new locus tag: SAUSA300_RS12635 ]
  • symbol: SAUSA300_2286
  • description: hypothetical protein
  • length: 108
  • theoretical pI: 6.37731
  • theoretical MW: 11758.3
  • GRAVY: 1.26574

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Protein of unknown function UPF0060
  • PFAM:
    DMT (CL0184) UPF0060; Uncharacterised BCR, YnfA/UPF0060 family (PF02694; HMM-score: 137.9)
    and 5 more
    EamA; EamA-like transporter family (PF00892; HMM-score: 17.1)
    Mg_trans_NIPA; Magnesium transporter NIPA (PF05653; HMM-score: 15.6)
    no clan defined DUF5381; Family of unknown function (DUF5381) (PF17353; HMM-score: 9.8)
    PGPGW; Putative transmembrane protein (PGPGW) (PF09656; HMM-score: 9.3)
    SdpI; SdpI/YhfL protein family (PF13630; HMM-score: 6.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004115
    • TAT(Tat/SPI): 0.000221
    • LIPO(Sec/SPII): 0.057069
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLYPIFIFILAGLCEIGGGYLIWLWLREGQSSLVGLIGGAILMLYGVIATFQSFPSFGRVYAAYGGVFIIMSLIFAMVVDKQMPDKYDVIGAIICIVGVLVMLLPSRA

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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