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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS07505 [old locus tag: SAUSA300_1374 ]
- pan locus tag?: SAUPAN003950000
- symbol: SAUSA300_RS07505
- pan gene symbol?: ribU
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS07505 [old locus tag: SAUSA300_1374 ]
- symbol: SAUSA300_RS07505
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1541463..1542008
- length: 546
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1541463..1542008) NCBI
- BioCyc: SAUSA300_RS07505 BioCyc
- MicrobesOnline: see SAUSA300_1374
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481
541ATGCAACAAAATAAACGTCTTATCACAATAAGTATGTTGAGCGCGATTGCGTTTGTGTTA
ACTTTTATCAAGTTTCCTATACCATTTTTGCCACCATACTTAACTTTAGATTTTAGTGAT
GTACCGTCACTACTAGCTACATTTACGTTTGGACCAGTTGCCGGTATCGTAGTTGCACTG
GTTAAAAATTTATTGAACTACTTATTTAGTATGGGCGATCCAGTTGGACCATTTGCTAAC
TTTTTAGCAGGCGCAAGTTTCTTATTAACTGCTTACGCCATCTATAAAAATAAACGTTCA
ACAAAATCTTTGATTACTGGATTAATCATTGCAACAATCGTTATGACTATCGTGTTGAGT
ATTTTGAACTATTTCGTTCTATTACCTTTGTACGGTATGATATTTAACTTAGCTGATATC
GCAAATAATCTTAAAGTAATCATTGTTTCAGGAATTATACCATTCAATATTATTAAAGGT
ATCGTTATTTCTATTGTATTTATTTTACTATATAGAAGGCTTGCGAATTTCTTGAAAAGA
ATTTAA60
120
180
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546
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS07505 [old locus tag: SAUSA300_1374 ]
- symbol: SAUSA300_RS07505
- description: hypothetical protein
- length: 181
- theoretical pI: 10.6184
- theoretical MW: 20024.3
- GRAVY: 1.10552
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Unknown substrate ECF transporter S component, folate family (TIGR04518; HMM-score: 34.4)and 1 moremembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family (TIGR03074; EC 1.1.-.-; HMM-score: 9.2)
- TheSEED: see SAUSA300_1374
- PFAM: Gx_transp (CL0315) ECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 96.3)and 10 moreECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 46.5)Thia_YuaJ; Thiamine transporter protein (Thia_YuaJ) (PF09515; HMM-score: 18.9)CbiM; Cobalt uptake substrate-specific transmembrane region (PF01891; HMM-score: 17.3)no clan defined DUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 15.6)Gx_transp (CL0315) Hpre_diP_synt_I; Heptaprenyl diphosphate synthase component I (PF07456; HMM-score: 12.4)no clan defined DUF1772; Domain of unknown function (DUF1772) (PF08592; HMM-score: 10)Tmemb_14; Transmembrane proteins 14C (PF03647; HMM-score: 8.7)DUF5083; Domain of unknown function (DUF5083) (PF16890; HMM-score: 7.4)MNHE; Na+/H+ ion antiporter subunit (PF01899; HMM-score: 6.5)Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 6.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.05587
- TAT(Tat/SPI): 0.000847
- LIPO(Sec/SPII): 0.010773
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI: 447109656 NCBI
- RefSeq: WP_001186912 NCBI
- UniProt: see SAUSA300_1374
⊟Protein sequence[edit | edit source]
- MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKRI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: FMN-box see SAUSA300_1374
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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