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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS09580 [old locus tag: SAUSA300_1751 ]
  • pan locus tag?: SAUPAN004550000
  • symbol: SAUSA300_RS09580
  • pan gene symbol?: hsdS2
  • synonym:
  • product: specificity determinant HsdS

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS09580 [old locus tag: SAUSA300_1751 ]
  • symbol: SAUSA300_RS09580
  • product: specificity determinant HsdS
  • replicon: chromosome
  • strand: -
  • coordinates: 1935644..1936843
  • length: 1200
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAGTAATACACAAAAGAAAAATGTGCCAGAATTGAGATTCCCAGGATTTGAAGGCGAA
    TGGGAAGAGAAGAAGTTAGGGAATCTTACTACCAAAATAGGTAGTGGAAAGACTCCCAAA
    GGTGGAAGTGAAAACTATACAAACAAAGGCATACCATTTTTAAGGAGTCAAAATATTAGA
    AATGGTAAATTAAATCTTAATGACTTAGTTTATATTAGTAAAGATATAGATGATGAGATG
    AAAAATAGTAGAACGTACTATGGTGATGTTCTTTTAAATATTACAGGAGCATCAATAGGT
    AGAACAGCCATTAATTCGATAGTTGAAACGCATGCTAATTTAAATCAACATGTATGTATT
    ATTAGATTGAAAAAAGAGTATTATTATAATTTTTTTGGACAGTATCTATTATCAAGAAAA
    GGTAAAAGGAAAATTTTCCTTGCACAAAGTGGAGGTAGTCGAGAAGGTCTAAACTTCAAA
    GAAATTGCTAATTTAAAAATCTTCACCCCAACTATATTTGAAGAACAGCAAAAAATAGGC
    AAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAACTTGAATTGCTT
    CAACAACAGAAAAAAGGCTATATGCAGAAAATCTTCACACAAGAATTGCGATTCAAAGAT
    GAGAATGGTGAAGAATATCCAGAGTGGGAAAACAAATTCATAAAAGACATCTTTATCTTT
    GAAAATAATAGAAGAAAACCAATTACTTCTTCATTAAGAGAAAAGGGGTTATACCCTTAC
    TATGGTGCAACTGGAATTATTGATTACGTAAAAGATTATTTATTCAATAATGAAGAACGA
    TTACTAATAGGAGAAGATGGTGCAAAATGGGGGCAGTTTGAGACGAGTAGCTTTATTGCT
    AATGGGCAATACTGGGTAAATAATCATGCGCATGTAGTTAAAAGTAATGATCATAATTTG
    TTTTTTATGAATTATTATTTAAATTTTAAAGAACTACGAGCATTTGTCACAGGTAATGCA
    CCAGCTAAATTAACTCATGCGAACTTATGCAATATAAATCTTAAAATACCTTGTCTCACT
    GAACAAGATAAAGTAAGTGCATTGTTAAAATCTATAGACAATAAAATGAATAATCAAATG
    AATAGAATTGAGTTATTAAAAGAACGTAAAAAAGGACTATTACAAAAAATGTTTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS09580 [old locus tag: SAUSA300_1751 ]
  • symbol: SAUSA300_RS09580
  • description: specificity determinant HsdS
  • length: 399
  • theoretical pI: 9.81387
  • theoretical MW: 46467.8
  • GRAVY: -0.66015

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division septum site-determining protein MinD (TIGR01968; HMM-score: 13.4)
  • TheSEED: see SAUSA300_1751
  • PFAM:
    TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 143.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.049488
    • TAT(Tat/SPI): 0.002377
    • LIPO(Sec/SPII): 0.003703
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIFENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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