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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02965 [old locus tag: SA0507 ]
  • pan locus tag?: SAUPAN002321000
  • symbol: SA_RS02965
  • pan gene symbol?:
  • synonym:
  • product: N-acetyl-L,L-diaminopimelate deacetylase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02965 [old locus tag: SA0507 ]
  • symbol: SA_RS02965
  • product: N-acetyl-L,L-diaminopimelate deacetylase
  • replicon: chromosome
  • strand: -
  • coordinates: 592256..593431
  • length: 1176
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002745 (592256..593431) NCBI
  • BioCyc: G1G21-578 BioCyc
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
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    841
    901
    961
    1021
    1081
    1141
    GTGTTAGATTGGTTCCAACTAGCAAATAATAAAGAAAATAAAACAATTCAACTCAGACGT
    TATTTACACCAATATCCTGAGTTATCTTTTGAAGAATTTCAAACACATGATTATATTGTT
    AACCAATTAAGCCAGTTATCTTGTGATATTGAAACTCCTATCGGCCGCAATGGTATCAAA
    GCCACATTTAAAGGCTTGGGCACAGGACCTACCATTGCATTAAGAGCTGACTTTGATGCG
    TTACCTGTCGAGGAATTAAACGATGTGCCTTATAAGTCTAAAAATCCAGGATGTATGCAT
    GCGTGTGGGCATGATGGTCATACAGCAATTTTACTTACTGTAGCAGAGATTTTAGATGAA
    CATAAACATTTATTAGAAGGTAATGTTGTATTAATATTCCAGTACGGTGAAGAAATCATG
    CCAGGTGGTTCTCAAGAAATGATAGATGCTGGATGTCTGGAAAATGTAGATAGAATTTAC
    GGTACACATTTATGGAGTGGTTATCCTACTGGAACTATTCATTCACGTGCGGGGGCAATC
    ATGGCCTCTCCAGATGAATTTAGCGTCACAATTAAAGGTCGTGGTGGTCATGGTGCCAAA
    CCTCATGAAACCATTGACCCAATAGTAATCATGGCAGAGTTCATTTTAAGTGCACAAAAA
    ATAATTTCACGTACGATCGATCCAGTTAAACAAGCTGTACTTTCATTTGGAATGATTCAA
    GCAGGTACCACAGATAGCGTTATTCCTGATCAAGCATTTTGTAAAGGTACAGTTAGAACT
    TTCGATTCAGATATACAGAATCATGTAATGGACAAAATGGATAAGCTTCTACAAGGTTTA
    GCAATAGCAAATGATATTAACTATGATTTGAATTATATTAAAGGGTATTTGCCTGTCCAT
    AATAACGAGAAAGCATATCAAGTTATTAAAGAAGCAACAAATGACTTACATGTACGCTTT
    AATGAATCAGATTTAATGATGATTGGAGAAGATTTTTCACATTATTTGAAAGTACGACCA
    GGTGCATTCTTTCTGACTGGTTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCAT
    AATCCCAAATTTGATATTGATGAAAAATCATTAAAATACGCTGTAGCTGTATTTTTAAAA
    ATCATTGAATTAGAGCAAGTATTTAAAACAAATTAA
    60
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    1176

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS02965 [old locus tag: SA0507 ]
  • symbol: SA_RS02965
  • description: N-acetyl-L,L-diaminopimelate deacetylase
  • length: 391
  • theoretical pI: 5.65496
  • theoretical MW: 43623.4
  • GRAVY: -0.231202

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 385.4)
    and 6 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 38.7)
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 33.4)
    amidase, hydantoinase/carbamoylase family (TIGR01879; EC 3.5.-.-; HMM-score: 28.4)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 26.9)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 20.8)
    Metabolism Central intermediary metabolism Nitrogen metabolism allantoate amidohydrolase (TIGR03176; EC 3.5.3.9; HMM-score: 17.8)
  • TheSEED:
  • PFAM:
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 114.2)
    and 2 more
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 39.1)
    Peptidase_MH (CL0035) Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 13.9)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008938
    • TAT(Tat/SPI): 0.000432
    • LIPO(Sec/SPII): 0.000589
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446810664 NCBI
  • RefSeq: WP_000887920 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MLDWFQLANNKENKTIQLRRYLHQYPELSFEEFQTHDYIVNQLSQLSCDIETPIGRNGIKATFKGLGTGPTIALRADFDALPVEELNDVPYKSKNPGCMHACGHDGHTAILLTVAEILDEHKHLLEGNVVLIFQYGEEIMPGGSQEMIDAGCLENVDRIYGTHLWSGYPTGTIHSRAGAIMASPDEFSVTIKGRGGHGAKPHETIDPIVIMAEFILSAQKIISRTIDPVKQAVLSFGMIQAGTTDSVIPDQAFCKGTVRTFDSDIQNHVMDKMDKLLQGLAIANDINYDLNYIKGYLPVHNNEKAYQVIKEATNDLHVRFNESDLMMIGEDFSHYLKVRPGAFFLTGCGNESKGITAPHHNPKFDIDEKSLKYAVAVFLKIIELEQVFKTN

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]