From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05770 [old locus tag: SA1014 ]
  • pan locus tag?: SAUPAN003431000
  • symbol: SA_RS05770
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05770 [old locus tag: SA1014 ]
  • symbol: SA_RS05770
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1148012..1149502
  • length: 1491
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1148012..1149502) NCBI
  • BioCyc: SA_RS05770 BioCyc
  • MicrobesOnline: see SA1014

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGGT
    GCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCAT
    AACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAATT
    AAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTAT
    GAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGGT
    ACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGTA
    GTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGGG
    CATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATGT
    GGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTTA
    GGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTACA
    TTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTTT
    ACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAGT
    TATTTATATTGGTACTGTAAAACAATTAAAAACGATCCTAAAGCGTCATATTCTTATGAA
    GACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTTT
    ACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATGG
    GGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTACA
    ATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGTA
    GATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGCT
    CGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTCA
    TCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTTC
    TTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTATC
    TTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCAA
    TTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACAA
    ATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGTA
    TTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1491

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS05770 [old locus tag: SA1014 ]
  • symbol: SA_RS05770
  • description: hypothetical protein
  • length: 496
  • theoretical pI: 7.17592
  • theoretical MW: 54042.6
  • GRAVY: 0.753427

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids TRAP transporter, DctM subunit (TIGR00786; HMM-score: 27.9)
  • TheSEED: see SA1014
  • PFAM:
    IT (CL0182) DcuC; C4-dicarboxylate anaerobic carrier (PF03606; HMM-score: 578.6)
    and 2 more
    DctM; Tripartite ATP-independent periplasmic transporter, DctM component (PF06808; HMM-score: 38.8)
    Na_H_antiporter; Na+/H+ antiporter family (PF03553; HMM-score: 21.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 21 aa
    • SP(Sec/SPI): 0.846276
    • TAT(Tat/SPI): 0.005028
    • LIPO(Sec/SPII): 0.034606
    • Cleavage Site: CS pos: 21-22. AGA-YS. Pr: 0.3698
  • predicted transmembrane helices (TMHMM): 13

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKTIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS05770&oldid=98962"