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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08920 [old locus tag: SA1583 ]
  • pan locus tag?: SAUPAN004448000
  • symbol: SA_RS08920
  • pan gene symbol?: rot
  • synonym:
  • product: MarR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08920 [old locus tag: SA1583 ]
  • symbol: SA_RS08920
  • product: MarR family transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 1821811..1822212
  • length: 402
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1821811..1822212) NCBI
  • BioCyc: SA_RS08920 BioCyc
  • MicrobesOnline: see SA1583

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAAAGTAAATAACGACACTGTATTTGGGATTTTGCAATTAGAAACACTTTTGGGT
    GACATTAACTCAATTTTCAGCGAGATTGAAAGCGAATACAAAATGTCTAGAGAAGAAATT
    TTAATTTTACTAACTTTATGGCAAAAAGGTTCTATGACGCTTAAAGAAATGGACAGATTT
    GTTGAAGTTAAACCGTATAAGCGTACGAGAACGTATAATAATTTAGTTGAATTAGAATGG
    ATTTACAAAGAGCGTCCTGTTGACGATGAAAGAACAGTTATTATTCATTTCAATGAAAAG
    TTACAACAAGAGAAAGTAGAGTTGTTGAATTTCATCAGTGATGCCATTGCAAGTAGAGCA
    ACAGCAATGCAAAATAGTTTAAACGCAATTATTGCTGTGTAA
    60
    120
    180
    240
    300
    360
    402

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS08920 [old locus tag: SA1583 ]
  • symbol: SA_RS08920
  • description: MarR family transcriptional regulator
  • length: 133
  • theoretical pI: 4.83329
  • theoretical MW: 15599.9
  • GRAVY: -0.240602

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 77.1)
  • TheSEED: see SA1583
  • PFAM:
    HTH (CL0123) MarR; MarR family (PF01047; HMM-score: 32.8)
    and 1 more
    GBD (CL0202) Lyase_N; Lyase, N terminal (PF09092; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006152
    • TAT(Tat/SPI): 0.000205
    • LIPO(Sec/SPII): 0.000614
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKVNNDTVFGILQLETLLGDINSIFSEIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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