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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS09145 [old locus tag: SA1625 ]
- pan locus tag?: SAUPAN004550000
- symbol: SA_RS09145
- pan gene symbol?: hsdS2
- synonym:
- product: specificity determinant HsdS
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGAGTAATACACAAACGAAAAATGTGCCAGAGTTGAGATTCCCAGGATTTGAGGGCGAA
TGGGAAGAGAAGAAGTTAGGGAATCTTACTACCAAAATAGGTAGTGGAAAGACTCCCAAA
GGTGGAAGTGAAAACTATACAAACAAAGGCATACCATTTTTAAGGAGTCAAAATATTAGA
AATGGTAAATTAAATCTTAATGACTTAGTTTATATTAGTAAAGATATAGATGATGAGATG
AAAAATAGTAGAACGTACTATGGTGATGTTCTTTTAAATATTACAGGAGCATCAATAGGT
AGAACAGCCATTAATTCGATAGTTGAAACGCATGCTAATTTAAATCAACATGTATGTATT
ATTAGATTAAAAAAAGAGTATTATTATAATTTTTTTGGACAGTATCTATTATCAAGAAAA
GGTAAAAGAAAAATTTTCCTTGCACAAAGTGGAGGTAGTCGAGAAGGACTAAACTTCAAA
GAAATTGCTAATTTAAAAATCTTCACCCCAACTATATTTGAAGAACAACAAAAAATAGGA
CAATTCTTCAGCAAACTTGACCAACAAATTGAATTAGAAGAACAAAAACTTGAATTACTT
CAACAACAGAAAAAATGCTATATACAGAAAATCTTCTCACAAGAATTACGATTCAAAGAT
GAAGAAGGTAATTACTATAAAGGATGGAACAAAAAGCAATTAAAAGATGTATTAGAATTT
AGTAATAAAAGAACTATTAATGAAAATGAATATCCTGTTTTAACATCGTCAAGACAAGGT
TTAATACTTCAGTCAGACTACTATAAAGATAGGAAAACTTTTGCAGAGAGTAATATTGGG
TATTTCATACTCCCTAAAAATCATATAACATACCGTTCAAGAAGCGACGATGGAATTTTT
AAGTTTAATTTAAATCTAATGATTGATGTAGGTATTATTAGTAAATATTACCCTGTCTTT
AAAGGGATAGATGCAAATCAATATTATTTAACATTACACTTAAACTATCAACTGAAAAAA
GAATATATTAAATATGCAACTGGTACATCACAATTGGTACTCTCACAAAAAGACTTGCAA
AACATAAAGACTAAATTGCCATCTTATGAAGAACAACAAAAAATCGGTGATTTTTTCAGT
GAAATAGATAGATTGGTTGAAAAACAATCTTCAAAAGTCGGACGATTAAAAGTACGTAAA
AAAGAACTATTACAAAAAATGTTTGTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS09145 [old locus tag: SA1625 ]
- symbol: SA_RS09145
- description: specificity determinant HsdS
- length: 409
- theoretical pI: 9.95669
- theoretical MW: 47802.3
- GRAVY: -0.693643
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SA1625
- PFAM: TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 116.5)and 1 moreno clan defined CitX; Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (PF03802; HMM-score: 18.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.043135
- TAT(Tat/SPI): 0.002275
- LIPO(Sec/SPII): 0.003105
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGQFFSKLDQQIELEEQKLELLQQQKKCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEFSNKRTINENEYPVLTSSRQGLILQSDYYKDRKTFAESNIGYFILPKNHITYRSRSDDGIFKFNLNLMIDVGIISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVLSQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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