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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS12325 [old locus tag: SA2146 ]
- pan locus tag?: SAUPAN005861000
- symbol: SA_RS12325
- pan gene symbol?: tcaA
- synonym:
- product: zinc ribbon domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1381ATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAAGATGATGTACAGATATGTACACAA
TGTGGACATAAATTTGATAGTCGTCAAGCATTATATAGAAAGTCAACCGATGAAGATATA
CAAACTAATAACATCAAGATGAGAAAAATGGTGCCTTGGGCAATTGGTTTTTTCATTTTA
ATCTTAATTATTATATTGTTCTTTTTACTAAGAAACTTCAATTCACCTGAAGCGCAAACT
AAAATATTAGTGAATGCGATTGAGAATAATGATAAACAAAAAGTAGCAACATTATTAAGT
ACTAAAGATAATAAAGTAGATTCTGAAGAAGCGAAAGTATACATTAACTATATCAAAGAT
GAAGTTGGGCTTAAGCAATTTGTCAGCGACCTTAAAAATACGGTACATAAATTGAATAAG
AGTAAGACCAGCGTAGCTTCTTATATTCAAACCAGATCTGGTCAAAATATATTACGTGTA
AGTAAAAATGGCACGCGTTATATCTTTTTCGATAATATGAGCTTTACTGCACCTACCAAG
CAACCAATTGTTAAGCCGAAAGAAAAAACAAAATATGAGTTTAAATCTGGTGGTAAGAAA
AAGATGGTTATAGCTGAAGCAAATAAAGTGACGCCAATAGGTAATTTTATACTGGGGACA
TATAGAATTCCAGCTATGAAATCAACTGAGAACGGTGATTTTGCAGGCTATTTAAAATTT
GATTTTAGACAAAGTAATTCTGAAACGGTAGATGTTACTGAAGATTTTGAAGAAGCAAAT
ATAACTGTAACTTTAAAAGGCGATACAAAATTAAATGATAGTTCTAAAAAAGTAACTATA
AATGACCGTGAAATGGCATTTTCAAGTTCCAAAACGTATGGTCCATATCCACAAAATAAA
GATATTACCATTTCAGCTTCAGGTAAAGCGAAAGGTAAAACATTTACAACACAGACGAAG
ACGATTAAAGCCAGCGATTTAAAATACAATACAGAGATAACTTTGAATTTTGACAGTGAA
GATATCGAAGACTATGTTGAAAAGAAAGAAAAAGAAGAAAACAGCTTGAAGAACAAATTG
ATAGAATTCTTTGCTGGATATTCTTTAGCGAATAATGCTGCGTTTAATCAGTCAGATTTT
GATTTTGTATCGTCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGT
GTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAAATTATAGATGCTGAAAAACAT
GGTGATAAGATTACCGCAACCGTAAGATTAATAAATGAAAACGGTAAGCAAGTAGATAAA
GAATATGAGCTTGAACAAGGCTCGCAAGACCGCTTGCAATTAATCAAGACATCAGAAAAA
TAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS12325 [old locus tag: SA2146 ]
- symbol: SA_RS12325
- description: zinc ribbon domain-containing protein
- length: 460
- theoretical pI: 9.60167
- theoretical MW: 52130.9
- GRAVY: -0.632826
⊟Function[edit | edit source]
- ⊞TIGRFAM: Energy metabolism Sugars 5-deoxy-glucuronate isomerase (TIGR04378; EC 5.3.1.-; HMM-score: 15.6)Regulatory functions DNA interactions putative regulatory protein, FmdB family (TIGR02605; HMM-score: 13.7)and 1 more
- TheSEED: see SA2146
- ⊞PFAM: Zn_Beta_Ribbon (CL0167) zf-ribbon_3; zinc-ribbon domain (PF13248; HMM-score: 28.3)zinc_ribbon_2; zinc-ribbon domain (PF13240; HMM-score: 25.3)and 12 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKSCPKCGQQAQDDVQICTQCGHKFDSRQALYRKSTDEDIQTNNIKMRKMVPWAIGFFILILIIILFFLLRNFNSPEAQTKILVNAIENNDKQKVATLLSTKDNKVDSEEAKVYINYIKDEVGLKQFVSDLKNTVHKLNKSKTSVASYIQTRSGQNILRVSKNGTRYIFFDNMSFTAPTKQPIVKPKEKTKYEFKSGGKKKMVIAEANKVTPIGNFILGTYRIPAMKSTENGDFAGYLKFDFRQSNSETVDVTEDFEEANITVTLKGDTKLNDSSKKVTINDREMAFSSSKTYGPYPQNKDITISASGKAKGKTFTTQTKTIKASDLKYNTEITLNFDSEDIEDYVEKKEKEENSLKNKLIEFFAGYSLANNAAFNQSDFDFVSSYIKKGSSFYDDVKKRVSKGSLMMISSPQIIDAEKHGDKITATVRLINENGKQVDKEYELEQGSQDRLQLIKTSEK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available