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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13260 [old locus tag: SA2313 ]
  • pan locus tag?: SAUPAN006174000
  • symbol: SA_RS13260
  • pan gene symbol?:
  • synonym:
  • product: haloacid dehalogenase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13260 [old locus tag: SA2313 ]
  • symbol: SA_RS13260
  • product: haloacid dehalogenase
  • replicon: chromosome
  • strand: -
  • coordinates: 2598232..2599032
  • length: 801
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (2598232..2599032) NCBI
  • BioCyc: G1G21-2693 BioCyc
  • MicrobesOnline: see SA2313

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGTTAAGGCTATTGCGGTAGATATGGACGGGACGTTTTTAGATTCGAAAAAGACATAC
    GATAAACCGAGATTTGAAGCGATTTTTACTGAACTTAGAAATAGAGATATTACATTTATT
    GCTGCGAGTGGCAATCAATATGCGAAGTTGAAGTCTATTTTCGGGGATAGAGATATGTAT
    TTTATTTCTGAAAATGGTGCAGTTATTTATAAAGGCAATGAGTTATATAATTATAAAAGC
    TTTAATCGTCAGGTGTTTCAACAGGTCGTCGATTACTTAAATATGAACCAAAGTATTGAT
    CAACTCGTCATCTGTGGTTTGAAAAGCGCGTATATTTTAAAACATACTTCTGAAGCATTT
    AAAGAAGATACGAGATTTTATTATCATCAGTTAAAAGAAATTGACAGTCTACAACAATTA
    CCTGAGGATGATTATGTCAAAATAGCATTTAATATTAATCGTGAGACGCATCCAAATGTT
    GACGAAGAAGTAGCAACGCAATTCAGCAATGATATTAAACTTGTCTCAAGTGGGCACGAT
    AGCATTGATATTATTATGCCAAACATGACTAAAGGGCAGGCATTAAAACGATTGTTAGAT
    AAATGGGAAATGTCTCCTTCAGAGCTCATGGCCTTTGGAGATGCGAATAATGATAAAGAT
    ATGCTAGCGTTCGCTAAGCATAGTTATGTGATGGAAAATAGTCATGATGAAGAATTGTTC
    AATATTGCCTCGGCTGTCGCTCCAAGTAATGATAAGCAGGGTGTTTTAACGATTATCGAA
    CAAGAAGTATTGAACAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    801

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS13260 [old locus tag: SA2313 ]
  • symbol: SA_RS13260
  • description: haloacid dehalogenase
  • length: 266
  • theoretical pI: 4.75816
  • theoretical MW: 30536.3
  • GRAVY: -0.444361

Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 168.1)
    and 15 more
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIB (TIGR01484; HMM-score: 81.5)
    sucrose-phosphate phosphatase subfamily (TIGR01482; EC 3.1.3.-; HMM-score: 66.6)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 62.9)
    sucrose phosphatase (TIGR01485; EC 3.1.3.24; HMM-score: 48.7)
    mannosyl-3-phosphoglycerate phosphatase family (TIGR01486; EC 3.1.3.-; HMM-score: 37.5)
    mannosyl-3-phosphoglycerate phosphatase (TIGR02461; EC 3.1.3.70; HMM-score: 37.3)
    sucrose-phosphate synthase, sucrose phosphatase-like domain (TIGR02471; HMM-score: 36.6)
    Unknown function General mannosyl-3-phosphoglycerate phosphatase homolog (TIGR02463; EC 3.1.3.-; HMM-score: 32.4)
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IB (TIGR01490; HMM-score: 19.8)
    phosphoserine phosphatase-like hydrolase, archaeal (TIGR01491; HMM-score: 18.6)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair recombination protein rad52 (TIGR00607; HMM-score: 17.1)
    Cellular processes Cellular processes Adaptations to atypical conditions trehalose-phosphatase (TIGR00685; EC 3.1.3.12; HMM-score: 16.2)
    Metabolism Amino acid biosynthesis Serine family phosphoserine phosphatase SerB (TIGR00338; EC 3.1.3.3; HMM-score: 15.4)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (TIGR01670; EC 3.1.3.45; HMM-score: 14.1)
    Unknown function Enzymes of unknown specificity HAD phosphoserine phosphatase-like hydrolase, family IB (TIGR01488; HMM-score: 13.8)
  • TheSEED: see SA2313
  • PFAM:
    HAD (CL0137) Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 173.7)
    and 2 more
    S6PP; Sucrose-6F-phosphate phosphohydrolase (PF05116; HMM-score: 69.9)
    Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 21)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007269
    • TAT(Tat/SPI): 0.001361
    • LIPO(Sec/SPII): 0.000944
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MVKAIAVDMDGTFLDSKKTYDKPRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMYFISENGAVIYKGNELYNYKSFNRQVFQQVVDYLNMNQSIDQLVICGLKSAYILKHTSEAFKEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGHDSIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELFNIASAVAPSNDKQGVLTIIEQEVLNK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]