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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13405 [old locus tag: SA2339 ]
  • pan locus tag?: SAUPAN006214000
  • symbol: SA_RS13405
  • pan gene symbol?: farE
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13405 [old locus tag: SA2339 ]
  • symbol: SA_RS13405
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2625821..2628289
  • length: 2469
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2625821..2628289) NCBI
  • BioCyc: SA_RS13405 BioCyc
  • MicrobesOnline: see SA2339

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    ATGGGGACATTCATCGCAAAACATAAATGGTCCGCGGTCATTGCATGGATAGTGATTGTA
    GCTGCAATATTGATACCACTTGCTACAAATGCACCGAAATTTGACAATGATATTAAAATG
    ACAGGATTAGAGTCGTTAGATACGAATAAAAAGATTGAAAAACATTTTAATCAAGATAGT
    GAAAAGGCACAAATACGTGTTGTCTTTAAGACGACTAAAGATGATGGTATTGTGCAACCG
    AACATTACAGAAGACATTAAGAAAACATTAGAGGATATAAAAAAAGATGACAAGCACATT
    GATAAAATATCAGATCCATATGAAAATAAGCAAATTAGTAAAGATAAAACAACTGCATTT
    GCAGATATCACATATGACGTTAGTCAAACATCTTTAAAAGATGGCTCTAGAGATAATGTT
    AAAAGTCATTTGAAAGACTTACGTGACAATCATAATGTACAAACAGAGTTAACTGGTACA
    GGAATGACATCTACAGAAGTAGGCGGTAATTCTGAACTAGTTGGTATTATTGTTGCATTT
    GTTGTACTGTTAATCACATTCGGTTCAGTCATTGCTGCAGGATTACCAATTATAAGTGCA
    TTGATTGGTCTAGCCTCTGGTGTAGGTATTATCAGTTTGTTAACTTATGCATTTGATATA
    CCAAATGTCACATTGACATTAGCCGTAATGATTGGACTAGCAGTTGGTATCGATTATGCT
    TTGTTTATTTTATTCAGGTATCGACAAGTTATGAAAACTGAAACAGATTACATTAAAGGC
    ATTGGTCTTGCAATAGGAACAGCAGGTAGTGCAGTTGTTTTTGCTGGTGTGACAGTTGTG
    ATTGCCGTATGTGGTTTATCGCTAGTTGGCATAGATTTCTTAGCAGTGATGGGGTTTGCT
    TCGGCAATTAGTGTTATATTTGCTGTATTCAGTGCACTGACTTTATTACCTGCGTTAATT
    AGTATTTTCCATAAACGCATTAAAGTGAACAAATTGCAGTCTAATTTTAAAAAAGATATT
    GATACGCCGTGGTCTAAATTTATTACAGGAAATGCACTTGCGGCAGTATTACTAGGTTTA
    ATCATATTAGTAGCAGCTGCAATACCAGTTAGTCATATGCGACTTGGTATTCCAGATGAC
    GGTGTTAAACCAGCAGATTCTACACAGAAAAAAGCTTACGATATAATCTCGGATAAATTT
    GGTGAAGGATTTAATGGCCAAATTCCGATGTTGATAAATGTTAAAGATAAAAAAGATGAT
    CCACAAGGATTACAACAAGATTTACAGTCTGTATATAAAGATATTAAAGATAAGAAAAAT
    GTAGATATCGTTACGCCGCCACAAATGAGTAAAGATAATGATTATGCTTTGATGGTCGTG
    ATACCTAAGCAAGGGCCTAATGCAGAGAGCACAAATGATTTAGTGCATGATTTACGAGAT
    TATCATAAAGATGCACAAGATAAATATGGGTTCAAAACGGAGATTTCGGGACAAAGTGTC
    ATTAATATTGATATGTCTAAAAAGTTAAATGAGGCGATACCTTTATTTGCAACAGTAATT
    GTTGTATTGGCATTTTTCTTATTAATGATTGTCTTCCGTTCAATTCTAATACCGTTAAAA
    GCAGTTTTAGGATTTGTCTTGTCATTAATGGCAACGCTAGGATTTACAACATTAGTAATG
    CAAGATGGTTTTATGAAAGGTCTGTTTGGTATTGAAACGACAGGACCAATGCTAGCATTT
    TTACCGGTTATTACTATAGGTATCTTATTTGGATTAGCGATGGATTATGAAGTCTTCCTT
    ATGTCGCGAATTCATGAAGAATATAGTAAAACAGGGGATAATGATTATTCTATCAAAGTA
    GGATTGAAAGAAAGCGGTCCTGTTATTGTAGCCGCTGCATTAATTATGTTTAGTGTCTTC
    TTTGCGTTTGTATTCCAAGAAGATGTCATGATTAAATCAATGGGTATGGCATTAGCGTTT
    GGTGTACTCTTTGATGCCTTCGTAGTCAGAATGATGTTAATTCCTGCATTAACGAAATTG
    TTTGGAAAAGGTTCGTGGTATTTACCAGCATGGTTGAATCGCATTATTCCACGAGTTGAT
    ATTGAAGGACATGCACTTGAAAAATATAAAACGGTTGAATCACAGGAATCTGAAGCCAAA
    GATAGTAAGGAAACATACGACACAACCTTTAAAGTATATCCACAAGGTGCAACAAATGTA
    TCGAAACATCAAGATGTACATGGGCAAGATGATGCACATTCAATAGTACTAGATGATAAA
    ACGATGGCATTGTACCAAGAAGTGAAACAGCAATCTGCAAGTTCATTGTTCTTATATGAT
    GCTTTAATAGATTATCAAAACAAGCATCAACTAAATTCAAAACAACAAGTAACGAATATA
    GAACAGTTGAATAAAAATATTGAAAAGCTCAATCAATTGTTAGAAAAAAATCTACGAAAT
    AAATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2469

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13405 [old locus tag: SA2339 ]
  • symbol: SA_RS13405
  • description: membrane protein
  • length: 822
  • theoretical pI: 6.58068
  • theoretical MW: 90527.7
  • GRAVY: 0.164842

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate transport protein (TIGR00833; HMM-score: 222.9)
    and 5 more
    Metabolism Transport and binding proteins Unknown substrate efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family (TIGR00921; HMM-score: 120.8)
    hopanoid biosynthesis associated RND transporter like protein HpnN (TIGR03480; HMM-score: 60.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking protein-export membrane protein, SecD/SecF family (TIGR00916; HMM-score: 9.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking protein-export membrane protein SecD (TIGR01129; HMM-score: 5.7)
    transmembrane receptor Patched (TIGR00918; HMM-score: 4.5)
  • TheSEED: see SA2339
  • PFAM:
    RND_permease (CL0322) MMPL; MMPL family (PF03176; HMM-score: 356.4)
    and 1 more
    no clan defined PAP_fibrillin; PAP_fibrillin (PF04755; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.713169
    • TAT(Tat/SPI): 0.006206
    • LIPO(Sec/SPII): 0.045188
    • Cleavage Site: CS pos: 31-32. TNA-PK. Pr: 0.2643
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGTFIAKHKWSAVIAWIVIVAAILIPLATNAPKFDNDIKMTGLESLDTNKKIEKHFNQDSEKAQIRVVFKTTKDDGIVQPNITEDIKKTLEDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQSNFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYDIISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDNDYALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIPLFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEEYSKTGDNDYSIKVGLKESGPVIVAAALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGKGSWYLPAWLNRIIPRVDIEGHALEKYKTVESQESEAKDSKETYDTTFKVYPQGATNVSKHQDVHGQDDAHSIVLDDKTMALYQEVKQQSASSLFLYDALIDYQNKHQLNSKQQVTNIEQLNKNIEKLNQLLEKNLRNKS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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