NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS01185 [old locus tag: NWMN_0211 ]
- pan locus tag?: SAUPAN001164000
- symbol: NWMN_RS01185
- pan gene symbol?: —
- synonym:
- product: ABC transporter ATP-binding protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: NWMN_RS01185 [old locus tag: NWMN_0211 ]
- symbol: NWMN_RS01185
- product: ABC transporter ATP-binding protein
- replicon: chromosome
- strand: -
- coordinates: 268732..269391
- length: 660
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_009641 (268732..269391) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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601ATGATAGAAATTAATAACCTTTCAAAGCGTTACCGTAACAAACAGATTTTCAATCATTTA
ACTATGTCCTTTGATAGTAATCGTTTAACCGTATTACTTGGTGATAATGGTGCTGGAAAA
TCAACATTACTTCGTATGATTGCTGGTATTGAAAAAGCTAATGATGGAACTATCAACTAT
TTCGGCGAAAAATGGAATCAAAGACAAATACAAAATCACATCGGTTATGTGCCACAAGAC
ATTGCGTTATTTGAACACATGACAGTGGCTGAAAACATTAAATTTTTTAAATCACTTTGT
AAAAATCCAATTAACGATACAACTATCAACGAATATTTACAGCAATTAAACTTTGATGAT
ACGTCTGCCAAAGTATCTACATTGTCCGGTGGGAATAAACGTAAAATTAATATATTAGTA
GGTTTACTAGGTCAACCTCGAATTCTCATTTTAGATGAACCGACAGTTGGTATTGATTTA
AAATCTAGACATGACATCCACCAACTACTTAACATCATGAAATCTAAATGTTTAATTATA
TTAACTACCCATCATTTAGATGAAGTTGAAGCACTTGCAGATGATATCAAGTTAATTGGC
CAAGATCCTTTTTATCAACATGTTTTAGAGGACAAACAATGGACTTATACCTATTATTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: NWMN_RS01185 [old locus tag: NWMN_0211 ]
- symbol: NWMN_RS01185
- description: ABC transporter ATP-binding protein
- length: 219
- theoretical pI: 7.27079
- theoretical MW: 25161.7
- GRAVY: -0.33105
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Transport and binding proteinsCarbohydrates, organic alcohols, and acidsABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 143.2)lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 136.3)Transport and binding proteinsOtherdaunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 135.2)Transport and binding proteinsAnionssulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 124.5)Cellular processesToxin production and resistanceputative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 121.2)Transport and binding proteinsUnknown substrateputative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 121.2)Cell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharidesLPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 115)Transport and binding proteinsOtherLPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 115)gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 114.3)Transport and binding proteinsAmino acids, peptides and aminesurea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 114.2)Protein fateProtein and peptide secretion and traffickingheme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 109.3)Transport and binding proteinsOtherheme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 109.3)Cellular processesOthernodulation ABC transporter NodI (TIGR01288; HMM-score: 108.4)Transport and binding proteinsOthernodulation ABC transporter NodI (TIGR01288; HMM-score: 108.4)Transport and binding proteinsAnionsmolybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 106.9)Transport and binding proteinsUnknown substrateenergy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 105.8)Transport and binding proteinsOtherrim ABC transporter (TIGR01257; HMM-score: 104.4)Cellular processesCell divisioncell division ATP-binding protein FtsE (TIGR02673; HMM-score: 103.5)Transport and binding proteinsAmino acids, peptides and aminesputative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 101.7)Transport and binding proteinsAmino acids, peptides and aminespolyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 99.2)thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 98.3)Transport and binding proteinsUnknown substrateenergy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 95.9)2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 92.4)Transport and binding proteinsAnionsphosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 91.3)Transport and binding proteinsAnionsphosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 91.1)Protein fateProtein and peptide secretion and traffickingtype I secretion system ATPase (TIGR01842; HMM-score: 90.7)ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 90.5)Transport and binding proteinsCarbohydrates, organic alcohols, and acidsD-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 88.7)Transport and binding proteinsAmino acids, peptides and aminesurea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 88.2)Cellular processesPathogenesistype I secretion system ATPase (TIGR03375; HMM-score: 87.5)Protein fateProtein and peptide secretion and traffickingtype I secretion system ATPase (TIGR03375; HMM-score: 87.5)proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 87.2)ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 85.3)Transport and binding proteinsCations and iron carrying compoundscobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 81.2)Transport and binding proteinsOtherpigment precursor permease (TIGR00955; HMM-score: 80)Protein fateProtein and peptide secretion and traffickinglipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 79.5)Transport and binding proteinsAnionsnitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 79.1)Transport and binding proteinsOthernitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 79.1)Transport and binding proteinsOtherthiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 78.8)Transport and binding proteinsAmino acids, peptides and aminesglycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 78.2)Cellular processesBiosynthesis of natural productsNHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 77)Transport and binding proteinsAmino acids, peptides and aminesNHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 77)thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 75.4)Transport and binding proteinsUnknown substrateanchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 74.6)Transport and binding proteinsCations and iron carrying compoundsnickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 69.2)ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 68.9)phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 66.9)Cell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharideslipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 65.5)Transport and binding proteinsOtherlipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 65.5)Biosynthesis of cofactors, prosthetic groups, and carriersOtherFeS assembly ATPase SufC (TIGR01978; HMM-score: 63.1)Protein fateProtein and peptide secretion and traffickingABC-type bacteriocin transporter (TIGR01193; HMM-score: 62.9)Protein fateProtein modification and repairABC-type bacteriocin transporter (TIGR01193; HMM-score: 62.9)Transport and binding proteinsOtherABC-type bacteriocin transporter (TIGR01193; HMM-score: 62.9)Transport and binding proteinsOtherantigen peptide transporter 2 (TIGR00958; HMM-score: 62.8)D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 62.8)ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 62.2)Cellular processesBiosynthesis of natural productsNHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 59.6)Transport and binding proteinsAmino acids, peptides and aminesNHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 59.6)Protein fateProtein and peptide secretion and traffickingtype I secretion system ATPase (TIGR01846; HMM-score: 53.4)Energy metabolismMethanogenesismethyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 52.7)Transport and binding proteinsCations and iron carrying compoundsnickel import ATP-binding protein NikD (TIGR02770; HMM-score: 52.5)Transport and binding proteinsOtherpleiotropic drug resistance family protein (TIGR00956; HMM-score: 49.3)Central intermediary metabolismPhosphorus compoundsphosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 48.3)Transport and binding proteinsAmino acids, peptides and aminescholine ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 45.5)Transport and binding proteinsAnionscystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 43.2)Transport and binding proteinsCarbohydrates, organic alcohols, and acidsglucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 36.3)Transport and binding proteinsOthermulti drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 31.6)DNA metabolismDNA replication, recombination, and repairexcinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 30.9)Transport and binding proteinsAmino acids, peptides and aminescyclic peptide transporter (TIGR01194; HMM-score: 27.4)Transport and binding proteinsOthercyclic peptide transporter (TIGR01194; HMM-score: 27.4)Transport and binding proteinsCarbohydrates, organic alcohols, and acidsperoxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 25.1)DNA metabolismDNA replication, recombination, and repairDNA repair protein RecN (TIGR00634; HMM-score: 15.3)DNA metabolismDNA replication, recombination, and repairDNA replication and repair protein RecF (TIGR00611; HMM-score: 13.3)DNA metabolismOtherMutS2 family protein (TIGR01069; HMM-score: 13.1)Unknown functionGeneralsmall GTP-binding protein domain (TIGR00231; HMM-score: 12.7)flagellar protein export ATPase FliI (TIGR03498; EC 3.6.3.14; HMM-score: 12.3)Cellular processesChemotaxis and motilityflagellar protein export ATPase FliI (TIGR03497; EC 3.6.3.14; HMM-score: 12)Cellular processesChemotaxis and motilityflagellar protein export ATPase FliI (TIGR03496; EC 3.6.3.14; HMM-score: 11.6)Energy metabolismATP-proton motive force interconversionATPase, FliI/YscN family (TIGR01026; EC 3.6.3.14; HMM-score: 11.4)Protein fateProtein and peptide secretion and traffickingtype VII secretion protein EccCb (TIGR03925; HMM-score: 11.2)
- TheSEED:
- PFAM: P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 110.1)AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 44.6)AAA_23; AAA domain (PF13476; HMM-score: 32.2)AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 25.5)RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 21.8)SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 20.3)AAA_15; AAA ATPase domain (PF13175; HMM-score: 19.6)AAA_16; AAA ATPase domain (PF13191; HMM-score: 19.1)AAA_30; AAA domain (PF13604; HMM-score: 18)AAA_13; AAA domain (PF13166; HMM-score: 16.5)AAA_27; AAA domain (PF13514; HMM-score: 16)G-alpha; G-protein alpha subunit (PF00503; HMM-score: 15.3)NACHT; NACHT domain (PF05729; HMM-score: 14.8)DLIC; Dynein light intermediate chain (DLIC) (PF05783; HMM-score: 14.7)AAA_22; AAA domain (PF13401; HMM-score: 14.1)ATPase_2; ATPase domain predominantly from Archaea (PF01637; HMM-score: 12.8)Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 12.7)MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 12.6)NTPase_1; NTPase (PF03266; HMM-score: 12.5)SbcCD_C; Putative exonuclease SbcCD, C subunit (PF13558; HMM-score: 11.9)PhoH; PhoH-like protein (PF02562; HMM-score: 11.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.05
- Cytoplasmic Membrane Score: 8.78
- Cellwall Score: 0.08
- Extracellular Score: 0.09
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.151
- Ymax_pos: 14
- Cmax: 0.13
- Cmax_pos: 54
- Smax: 0.287
- Smax_pos: 6
- Smean: 0.229
- D: 0.182
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MIEINNLSKRYRNKQIFNHLTMSFDSNRLTVLLGDNGAGKSTLLRMIAGIEKANDGTINYFGEKWNQRQIQNHIGYVPQDIALFEHMTVAENIKFFKSLCKNPINDTTINEYLQQLNFDDTSAKVSTLSGGNKRKINILVGLLGQPRILILDEPTVGIDLKSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWTYTYY
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- NWMN_RS01185 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]