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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
  • pan locus tag?: SAUPAN001695000
  • symbol: NWMN_RS05820
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
  • symbol: NWMN_RS05820
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1124831..1128295
  • length: 3465
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1124831..1128295) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

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    GTGACGGAATATAAAATTAAAGCGACTATTGAAGCTAGTGTAGCCAAATTCAAAAGGCAA
    ATCGATAGTGCGGTTAAGTCTGTGCAAAGATTTAAACGAGTAGCAGATCAAACTAAAGAT
    GTCGAATTAAATGCTGATGATAAAAAATTACAAAAAACTATCAAAGTTGCTAAAAAGTCT
    TTAGATGCCTTTAGTAACAAAAAAGTAAAAGCTAAATTAGATGCTAGTATACAAGACTTG
    CAACAAAAGGTACTAGAATCGAATTTTGAACTAGACAAACTAAACTCTAAAGAAGTTACT
    CCAGAGATTAAATTACAAAAACAAAAATTGACTAAAGATATCGCTGAAGCAGAAGCTAAG
    TTATCCGAACTAGAAAAGAAGCGTGTCAATATTGACATCAATGCAGATAACAGTAAATTC
    AATCGAGTGTTAAAAGTATCTAAAGCTAGTCTTGAAGCATTAAATAGGTCTAAAGCCAAA
    GCTATTATAGACGTGGACAATGGTGTTGCTAACTCTAAAATAAAACGCACTAAAGAAGAA
    CTTAAAAGTATTCCAAACAAAACTAGATCTCGACTAGATGTAGATACAGGACTTTCTATA
    CCAACTATTTATGCGTTTAAAAAATCATTAGACGCATTGCCAAACAAAAAAACAACGAAG
    GTAGATGTCGATACTAACGGTTTAAAGAAAGCTTATGCCTACATAATAAAAGTAAACGAC
    AATTTCCAAAGACAAATGGGGAATTTAGCTAATATGTTTCGCGTGTTCGGCACTGTAGGT
    TCTAATATGGTTGGTGGATTACTTACATCATCTTTTAGTATCTTAATACCTGTAATAGCG
    AGCGTAGTACCTGTAGTATTTGCGCTATTAAACGCTATCAAAGTGTTAACTGGCGGTGTA
    CTTGCTTTAGGTGGTGCTGTAGCAATAGCTGGTGCTGGCTTTGTAGCATTTGGCGCAATG
    GCTATCAGCGCTATAAAGATGCTTAGTGACGGCACTTTACAAGCTAGCTCAGCAACAAAC
    GAATACAAAAAAGCTTTAGATGGCGTAAAGTCAGCATGGACTGATATTATAAAGCAAAAT
    CAATCCGCTATCTTCACAACTCTTGCAAATGGTTTAAATACTGTTAAAACAGCAATGCAG
    AGCTTACAACCGTTTTTTAGTGGTATTTCAAGAGGAATGGAAGAGGCGTCTCAAAGTGTA
    CTTAAATGGGCTCAAAATAGCGGTGTAGCATCAAGGTTCTTCAACATGATGAATACAACT
    GGTGTTTCGGTATTTAACAAGCTATTAAGTGCTGCAGGAGGTTTCGGTGACGGATTAGTC
    AATGTGTTCACACAATTAGCACCACTGTTTCAATGGTCGGCTGATTGGTTGGATAGATTA
    GGTCAATCATTCTCTAATTGGGCTAATAGTGCAGCTGGAGAAAATTCGATAACTCGTTTT
    ATTGAATACACAAAAACAAACTTACCTATCATTGGTAATATTTTTAAAAATGTTTTCGTT
    GGAATTAACAATTTGATGAATGCATTCAGTGGATCATCAACTGGCATATTCCAATCTCTT
    GAACAAATGACAGCTAAGTTTAGGGAATGGTCTGAACAAGTAGGACAATCTCAAGGGTTT
    AAAGATTTTGTCAGCTATATACAAACTAATGGACCACTAATAATGCAATTAATTGGGAAC
    ATTGCAAGAGGATTAGTTGCATTCGCAACAGCGATGGCTCCTATAGCTAGTGCAGTATTA
    CGCGTTGCAGTAGCAATAACTGGTTGGATAGCTAACTTGTTTGAGGCGCATCCAGCTACA
    GCACAATTAGTTGGCGTCATTATAACTTTAGTTGGTGCATTTAGATTTTTAATTGCTCCA
    ATATTAGCGGTAATGGATTTTCTGGGGCCATTAGCAGCAAGATTAGTCGCATTAGTAACT
    AAGTTTGGTTGGGCTAAAACAGGAACTTTAGTATTAAGTAAGGCAATGACATCATTAAAA
    GGTCCAATAAAATTAGTTACAGCTATATTCCAATTGTTATTCGGTAAGATTGGATTAATT
    AGAAATGCTATCACAGGACTAGTAACTGTGTTTGGTATTTTAGGTGGTCCAATAACAATA
    GTAATTGGTGTAATCGCTGCATTAATAGCTATATTTGTTTTATTGTGGAATAAAAATGAA
    GGATTCAGAAACTTTATTATAAATGTTTGGAATGCGATAAAAACATTTATGGTTACAGTT
    TGGAATGTGTTGAAAACTGTAGCTTCGGTTGTATGGAATGCTATTTTAAAAGCTATCACT
    ACAGCAGTATCAAATGTATACAATTTTATAATGATTATTTGGAATCAAATAGTTGCTTAT
    TTGCAAGGGCTATGGAATGGAATTATCGCTATTGCAACAACAGTATGGAACCTTTTAGTT
    ACAATCATCACAACTGTTTTCACGACGATAATGACAATAGTTATGACGATATGGACAGCT
    ATTTGGACATTCTTAAGTACAATCTGGAACACGATAATTACAATCGCTACTACGATTTGG
    AATTTGTTAGTCACTGTAATAACTACAGTATTTACCACAATTATGACTATCGCAATGACA
    ATTTGGAACGCTATTTGGACGTTCTTACAAACGTTGTGGAACACTATAGTTACTGTGGCA
    ACTAAGGTTTGGAACGCTATCACTACAACTATATCTACTGCGTTACAAGCGGCATGGAGT
    TTTATTTCTAATATATGGAATACGATTTGGAGTTTCTTATCTGGTATATTAACGACAATT
    TGGAATAAAGTTGTAAGCATATTCACACAAGTTGTATCAACTATATCAGACAAAATGTCT
    CAAGCTTGGAACTTCATCGTGACTAAAGGTATGCAATGGGTATCTACTATAACAAGTACG
    CTAATTAACTTTGTTAATAGAGTTATTCAAGGATTCGTTAATGTTGTAAACAAAGTTAGT
    CAAGGTATGACAAATGCAGTAAATAAAATAAAAAGTTTTATAGGAGATTTTGTGTCTGCA
    GGTGCTGATATGATCCGTGGTTTAATTAGAGGTATTGGACAAATGGCTGGTCAATTAGTA
    GATGCAGCTAAAAATGTTGCTAAGAAAGCTTTAGATGCAGCTAAAAGTGCTTTGGGTATT
    CACTCACCTTCACGTGAATTCATGGATGTTGGTATGTATTCAATGCTAGGTTTCGTTAAA
    GGTATAGATAATCATTCAAGTAAAGTTATCCGTAATGTTTCTAATGTTGCAGATAAAGTA
    GTTGATGCATTTCAACCTACATTAAACGCACCTGACATTTCTAGTATTACAGGAAACTTA
    AGTAATTTAGGTGGAAATATAAATGCGCAAGTACAACACACACATTCTATTGAAACATCA
    CCGAACATGAAAACTGTTAAAGTTGAATTCGATGTTAATAACGATGCGCTTACTAGTATT
    GTTAACGGCAGAAATGCTAAACGCAATTCTGAGTATTACTTATAA
    60
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    3465

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
  • symbol: NWMN_RS05820
  • description: hypothetical protein
  • length: 1154
  • theoretical pI: 10.6502
  • theoretical MW: 125759
  • GRAVY: 0.314905

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 10.2)
    Traffic (CL0147) Sec20; Sec20 (PF03908; HMM-score: 8)
    no clan definedPhasin_2; Phasin protein (PF09361; HMM-score: 7.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 14
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.136
    • Ymax_pos: 36
    • Cmax: 0.105
    • Cmax_pos: 36
    • Smax: 0.247
    • Smax_pos: 30
    • Smean: 0.152
    • D: 0.142
  • predicted transmembrane helices (TMHMM): 12

Accession numbers[edit source | edit]

  • GI: 446063609 NCBI
  • RefSeq: WP_000141464 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTEYKIKATIEASVAKFKRQIDSAVKSVQRFKRVADQTKDVELNADDKKLQKTIKVAKKSLDAFSNKKVKAKLDASIQDLQQKVLESNFELDKLNSKEVTPEIKLQKQKLTKDIAEAEAKLSELEKKRVNIDINADNSKFNRVLKVSKASLEALNRSKAKAIIDVDNGVANSKIKRTKEELKSIPNKTRSRLDVDTGLSIPTIYAFKKSLDALPNKKTTKVDVDTNGLKKAYAYIIKVNDNFQRQMGNLANMFRVFGTVGSNMVGGLLTSSFSILIPVIASVVPVVFALLNAIKVLTGGVLALGGAVAIAGAGFVAFGAMAISAIKMLSDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNTVKTAMQSLQPFFSGISRGMEEASQSVLKWAQNSGVASRFFNMMNTTGVSVFNKLLSAAGGFGDGLVNVFTQLAPLFQWSADWLDRLGQSFSNWANSAAGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSSTGIFQSLEQMTAKFREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATAQLVGVIITLVGAFRFLIAPILAVMDFLGPLAARLVALVTKFGWAKTGTLVLSKAMTSLKGPIKLVTAIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWNKNEGFRNFIINVWNAIKTFMVTVWNVLKTVASVVWNAILKAITTAVSNVYNFIMIIWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAMTIWNAIWTFLQTLWNTIVTVATKVWNAITTTISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNFIVTKGMQWVSTITSTLINFVNRVIQGFVNVVNKVSQGMTNAVNKIKSFIGDFVSAGADMIRGLIRGIGQMAGQLVDAAKNVAKKALDAAKSALGIHSPSREFMDVGMYSMLGFVKGIDNHSSKVIRNVSNVADKVVDAFQPTLNAPDISSITGNLSNLGGNINAQVQHTHSIETSPNMKTVKVEFDVNNDALTSIVNGRNAKRNSEYYL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS05820 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]