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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11285 [old locus tag: NWMN_1956 ]
  • pan locus tag?: SAUPAN005298000
  • symbol: NWMN_RS11285
  • pan gene symbol?: gcp
  • synonym:
  • product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS11285 [old locus tag: NWMN_1956 ]
  • symbol: NWMN_RS11285
  • product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
  • replicon: chromosome
  • strand: -
  • coordinates: 2166382..2167407
  • length: 1026
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2166382..2167407) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGACTAAAGATATATTAATACTAGCTGTTGAAACAAGTTGTGATGAAACAAGCGTTAGT
    GTTATAAAAAATGGCAGAGATATTTTATCAAATACAGTTTTAAGTCAGATTGAAAGTCAT
    AAACGATTTGGCGGTGTCGTTCCCGAAGTGGCAAGTAGACATCACGTTGAAGGTATAACA
    GCAACAATAAACGAGGCTCTAGGGGATGCCGATGTATCAATAGAAGATATTGATGCCATA
    GCGGTTACAGAAGGCCCTGGACTAATTGGTGCGTTACTAATAGGTGTTAATGCAGCCAAA
    GCATTGGCATTTGCTTACGATAAGCCACTTATTCCTGTTCATCATATTGCAGGACATATA
    TATGCTAATCACATAGAAGAGCCATTAACATTCCCGCTAATTGCACTTATTGTTTCAGGT
    GGACATACTGAATTAGTTTATATGAAGGATCATTTATCATTTGAAGTCATTGGTGAAACA
    CGAGATGACGCAGTAGGTGAGGCTTATGATAAAGTGGCACGAACAATTGGTTTAAATTAT
    CCAGGTGGTCCACAAGTTGATCGGTTGGCTGCTGAAGGTGAAGATACTTATTCATTCCCT
    CGTGTTTGGTTGGATAAAGATAGTTATGATTTTAGTTTTAGTGGGTTGAAAAGTGCCGTA
    ATCAATCAACTTCACAATCAACGACAAAAAAATATTCCAATCATTGAAGCTAACGTAGCA
    ACGAGCTTTCAAAACAGTGTTGTAGAGGTGCTCACGTTTAAAGCTATTCAAGCTTGTAAA
    GAATATGGTGTTCAGCGATTAATTGTTGCTGGTGGCGTGGCGAGTAATAAAGGATTACGT
    CAATCTTTAGCGGATCAATGCAAAGTCAATGACATTCAATTAACTATCCCAAGTCCTAAA
    TTATGCACAGATAATGCTGCAATGATAGGCGTTGCCGGCCACTATTTGTATCAGCAAGGT
    CGATTTGCTGATTTAGCATTAAATGGGCACAGCAATATAGATTTAGAAGAGTATTCTGCA
    GAATAA
    60
    120
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    1020
    1026

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS11285 [old locus tag: NWMN_1956 ]
  • symbol: NWMN_RS11285
  • description: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
  • length: 341
  • theoretical pI: 4.7955
  • theoretical MW: 36818.4
  • GRAVY: 0.00469208

Function[edit source | edit]

  • reaction:
    EC 2.3.1.234?  ExPASy
    N6-L-threonylcarbamoyladenine synthaseL-threonylcarbamoyladenylate + adenine37 in tRNA = AMP + N6-L-threonylcarbamoyladenine37 in tRNA
  • TIGRFAM:
    Genetic information processingProtein synthesistRNA and rRNA base modificationtRNA threonylcarbamoyl adenosine modification protein TsaD (TIGR03723; HMM-score: 439.8)
    Genetic information processingProtein fateDegradation of proteins, peptides, and glycopeptidesmetallohydrolase, glycoprotease/Kae1 family (TIGR00329; HMM-score: 364.9)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairuniversal archaeal protein Kae1 (TIGR03722; HMM-score: 223.5)
    Genetic information processingProtein synthesistRNA and rRNA base modificationtRNA threonylcarbamoyl adenosine modification protein YeaZ (TIGR03725; HMM-score: 57.6)
    Genetic information processingProtein fateProtein modification and repaircarbamoyltransferase HypF (TIGR00143; HMM-score: 18.2)
  • TheSEED:
  • PFAM:
    Actin_ATPase (CL0108) Peptidase_M22; Glycoprotease family (PF00814; HMM-score: 344.7)
    Carbam_trans_N; Carbamoyltransferase N-terminus (PF02543; HMM-score: 20.8)
    FGGY_C; FGGY family of carbohydrate kinases, C-terminal domain (PF02782; HMM-score: 13.8)
    NADP_Rossmann (CL0063) DUF166; Domain of unknown function (PF02593; HMM-score: 13.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors: Fe2+
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.136
    • Ymax_pos: 21
    • Cmax: 0.109
    • Cmax_pos: 36
    • Smax: 0.209
    • Smax_pos: 9
    • Smean: 0.153
    • D: 0.142
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446081179 NCBI
  • RefSeq: WP_000159034 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGITATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHIYANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNYPGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVATSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPKLCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS11285 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]