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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • pan locus tag?: SAUPAN002477000
  • symbol: SA0567
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • symbol: SA0567
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 661110..662060
  • length: 951
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACATTTAATAAAGTATTATTGAGCTGGATAGTCATATTGATTATAACAACTAGCATA
    TATCTATTTTGGCAGTTGGGGGATATCAATGATGTATTTAACCAGTCTATTTTAATCAAT
    GTTAGATTACCGAGATTATTAGAAGCATTGTTGACAGGTATGATATTAACAGTTGCAGGT
    CTTATATTTCAAACAGTTTTAAATAATGCATTGGCAGATAGCTTTACATTAGGATTGGCA
    AGCGGTGCTACATTTGGTTCAGGATTAGCATTATTTTTAGGTTTAACAACGTTATGGATT
    CCTGTATTTTCAATAACATTTAGTTTGATAACATTAATAACTGTATTAGTCATTACGTCG
    GTATTGAGCCAAGGCTATCCAGTTAGAATCTTAATATTAAGTGGTTTAATGATTGGTGCA
    TTATTCAATTCACTTCTATATTTTTTGATTTTATTAAAACCTCGCAAATTAAATACAATT
    GCCAATTATTTGTTTGGTGGCTTTGGTGATGCAGAATACTCAAATGTATCCATAATAGCA
    ATCACATTTATCATTGCACTGTTTGGTATATTTATCATTCTTAATCAACTAAAGTTATTG
    CAATTAGGAGAACTAAAAAGTCAGTCACTAGGCTTAAATGTTCAATTGATTACATATATC
    GCGTTATGTATAGCTTCTATGATAACGGCGATAAATGTCGCATATGTTGGCATCATTGGA
    TTCATTGGTATGGTGATACCACAACTCATTAGAAAATGGCAGTGGAAACAATCATTAGGA
    AGACAATTGGCTTTGAATATTGTAATTGGAGGACAAATAATGGTTATGGCAGATTTTATT
    GGTAGCCATATACTGTCACCAGTACAAATACCGGCAAGCATTATTATTGCATTAATTGGT
    ATACCAGTGTTATTTTACATGCTAATATCTCAGTCGAAACGGTTACACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • symbol: SA0567
  • description: hypothetical protein
  • length: 316
  • theoretical pI: 10.0583
  • theoretical MW: 34616.7
  • GRAVY: 1.1557

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 120.9)
    Genetic information processingProtein fateProtein and peptide secretion and traffickingprotein translocase SEC61 complex gamma subunit, archaeal and eukaryotic (TIGR00327; HMM-score: 8.1)
  • TheSEED:  
    Stress ResponseStress Response - no subcategoryFlavohaemoglobin Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) 
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 214.7)
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 24)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.147
    • Ymax_pos: 11
    • Cmax: 0.158
    • Cmax_pos: 32
    • Smax: 0.267
    • Smax_pos: 1
    • Smean: 0.208
    • D: 0.171
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]