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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0964 [new locus tag: SA_RS05460 ]
  • pan locus tag?: SAUPAN003342000
  • symbol: SA0964
  • pan gene symbol?: ctaA
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0964 [new locus tag: SA_RS05460 ]
  • symbol: SA0964
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1094834..1095745
  • length: 912
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    TTGTTTGGCAAAAAGAATTTAAAATGGTTAGGTGTCGTAGCAACGTTAATGATGACATTT
    GTACAACTTGGTGGAGCCTTAGTTACCAAAACCGGATCAGCTGATGGTTGTGGTTCTTCT
    TGGCCACTATGTCATGGTGCGTTGATTCCAGAATTCTTTCCTATTGATACGATTATTGAG
    TTAAGTCATAGAGCCGTTTCAGCTTTGTCTTTATTAATGGTCTTATGGTTAGTTATCACT
    GCATGGAAACATATAGGCTATATTAAAGAAATTAAACCTTTATCAATCATTAGTGTTGGA
    TTCTTATTATTGCAAGCATTAATCGGAGCTGCCGCTGTTATTTGGCAACAAAACGATTAC
    GTTTTAGCATTGCACTTTGGTATATCATTAATCAGTTTCTCATCTGTATTTTTAATAACA
    TTGATTATTTTCTCTATAGATCAAAAATATGAAGCTGACGAATTATATATCAAAAAGCCA
    TTAAGACGTTTAACATGGTTAATGGCAATCATCATTTATTGTGGTGTTTATACTGGTGCA
    CTAGTGAGACATGCGGATGCAAGTTTAGCATATGGTGGTTGGCCATTGCCATTCCACGAT
    CTTGTACCACATTCAGAACAAGATTGGGTTCAACTCACGCATCGTATCATGGCTTTTATA
    GTGTTTACGATTATTATGATTACTTATATTCACGCTGTTAAAAATTATCCAAATAATCGT
    ACTGTTCATTATGGTTATACAGCTGCATTTATACTTGTTATATTACAAGTTATCACAGGT
    GCATTATCTATTATGACAAATGTTAACCTGATAATCGCACTTTTCCATGCATTATTTATC
    ACTTATTTATTTGGTATGACAACATACTTTATCATGCTAATGTTACGATCAGTAAGAAGT
    GACAAGCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    912

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0964 [new locus tag: SA_RS05460 ]
  • symbol: SA0964
  • description: hypothetical protein
  • length: 303
  • theoretical pI: 9.19403
  • theoretical MW: 34059.4
  • GRAVY: 0.762046

Function[edit source | edit]

  • reaction:
    EC 1.3.-.-?  ExPASy
  • TIGRFAM:
    methanobactin biosynthesis cassette protein MbnC (TIGR04160; HMM-score: 13)
    surface glycoprotein signal peptide (TIGR04207; HMM-score: 11.8)
  • TheSEED:  
    RespirationRespiration - no subcategoryBiogenesis of cytochrome c oxidases Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA 
  • PFAM:
    2heme_cytochrom (CL0328) COX15-CtaA; Cytochrome oxidase assembly protein (PF02628; HMM-score: 116.2)
    no clan definedDUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 9.9)
    GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 8.3)
    GPCR_A (CL0192) 7TMR-DISM_7TM; 7TM diverse intracellular signalling (PF07695; HMM-score: 7.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.354
    • Ymax_pos: 35
    • Cmax: 0.257
    • Cmax_pos: 35
    • Smax: 0.728
    • Smax_pos: 25
    • Smean: 0.515
    • D: 0.417
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MFGKKNLKWLGVVATLMMTFVQLGGALVTKTGSADGCGSSWPLCHGALIPEFFPIDTIIELSHRAVSALSLLMVLWLVITAWKHIGYIKEIKPLSIISVGFLLLQALIGAAAVIWQQNDYVLALHFGISLISFSSVFLITLIIFSIDQKYEADELYIKKPLRRLTWLMAIIIYCGVYTGALVRHADASLAYGGWPLPFHDLVPHSEQDWVQLTHRIMAFIVFTIIMITYIHAVKNYPNNRTVHYGYTAAFILVILQVITGALSIMTNVNLIIALFHALFITYLFGMTTYFIMLMLRSVRSDKQ

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA0964 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]