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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1297 [new locus tag: SA_RS07340 ]
  • pan locus tag?: SAUPAN003924000
  • symbol: aroA
  • pan gene symbol?: aroA
  • synonym:
  • product: 3-phosphoshikimate 1-carboxyvinyltransferase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1297 [new locus tag: SA_RS07340 ]
  • symbol: aroA
  • product: 3-phosphoshikimate 1-carboxyvinyltransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 1503118..1504416
  • length: 1299
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGGTAAGTGAACAAATTATCGATATTTCAGGGCCACTTAAAGGTGAAATAGAAGTGCCT
    GGAGATAAGTCGATGACACATCGAGCAATCATGTTAGCATCTTTAGCTGAAGGAACTTCC
    AATATTTATAAACCATTACTTGGTGAAGATTGTCGTCGTACAATGGATATATTCCGATTA
    TTAGGCGTAGATATTAAAGAAGATGAAGATAAATTGGTTGTGAATTCACCTGGATATAAA
    GCTTTTAAAACACCTCATCAAGTTTTATATACTGGAAACTCTGGCACAACGACTCGATTG
    TTAGCTGGTTTGTTAAGTGGTTTAGGTATTGAAAGTGTTTTGTCTGGCGATGTTTCAATT
    GGTAAAAGGCCAATGGATCGTGTCTTGAGACCATTGAAACTTATGGATGCGAATATTGAA
    GGTATTGAAGATAATTATACACCATTAATTATTAAGCCATCTGTCATAAAAGGTATAAAT
    TATCAAATGGAAGTTGCAAGTGCACAAGTAAAAAGTGCCATTTTATTTGCAAGTTTGTTT
    TCAAATGATACAACGGTAATAAAGGAATTAGATGTAAGTCGAAATCATACTGAGACGATG
    TTCAGACATTTTAATATTCCAATTGAAGCAGAAAGGTTATCAATAACTACAACCCCTGAT
    GCCATTCAACATATTAAACCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCG
    TTCTTTATTGTTGCAGCACTTATCACACCAGAAAGTGATGTAACAATTCATAATGTTGGA
    ATCAATCCAACACGTTCAGGTATTATTGATATTGTTGAAAAAATGGGCGGTAATATCCAA
    CTTTTCAATCAAACAACTGGTGCTGAACCTACTGCTTCTATTCGTATTCAATACACACCA
    ATGCTTCAACCAATAACAATCGAAGGAGAATTAGTTCCAAAAGCAATTGATGAACTGCCT
    GTAATAGCATTACTTTGTACACAAGCAGTTGGCACGAGTACAATTAAAGATGCCGAGGAA
    TTAAAAGTAAAAGAAACAAATAGAATTGATACAACGGCTGATATGTTAAACTTGTTAGGG
    TTTGAATTACAACCAACTAATGATGGATTGATTATTCATCCGTCAGAATTTAAAACAAAT
    GCAACAGTTGATAGTTTAACTGATCATCGAATAGGAATGATGCTTGCAGTTGCTTCTCTA
    CTTTCAAGCGAGCCTGTCAAAATCAAACAATTTGATGCTGTAAATGTATCATTTCCAGGA
    TTTTTACCAAAACTAAAGCTTTTAGAAAATGAGGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1299

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1297 [new locus tag: SA_RS07340 ]
  • symbol: AroA
  • description: 3-phosphoshikimate 1-carboxyvinyltransferase
  • length: 432
  • theoretical pI: 4.84023
  • theoretical MW: 47067.9
  • GRAVY: 0.0157407

Function[edit source | edit]

  • reaction:
    EC 2.5.1.19?  ExPASy
    3-phosphoshikimate 1-carboxyvinyltransferasePhosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate
  • TIGRFAM:
    MetabolismAmino acid biosynthesisAromatic amino acid family3-phosphoshikimate 1-carboxyvinyltransferase (TIGR01356; EC 2.5.1.19; HMM-score: 380.4)
    and 1 more
    Cell structureCell envelopeBiosynthesis and degradation of murein sacculus and peptidoglycanUDP-N-acetylglucosamine 1-carboxyvinyltransferase (TIGR01072; EC 2.5.1.7; HMM-score: 74.1)
  • TheSEED:  
    Chorismate Synthesis 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) alpha sub-homology division 
    and 1 more
    Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) alpha sub-homology division 
  • PFAM:
    EPT_RTPC (CL0290) EPSP_synthase; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) (PF00275; HMM-score: 448.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.101
    • Ymax_pos: 39
    • Cmax: 0.116
    • Cmax_pos: 39
    • Smax: 0.117
    • Smax_pos: 67
    • Smean: 0.07
    • D: 0.089
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MVSEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGTSNIYKPLLGEDCRRTMDIFRLLGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSIGKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLFSNDTTVIKELDVSRNHTETMFRHFNIPIEAERLSITTTPDAIQHIKPADFHVPGDISSAAFFIVAALITPESDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTPMLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLGFELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPGFLPKLKLLENEG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CodY regulon
    CodY(TF)important in Amino acid metabolismRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]