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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0767 [new locus tag: SACOL_RS03940 ]
  • pan locus tag?: SAUPAN002593000
  • symbol: SACOL0767
  • pan gene symbol?: saeQ
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL0767 [new locus tag: SACOL_RS03940 ]
  • symbol: SACOL0767
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 789447..789920
  • length: 474
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAATAAATTATTGCTACTCGTTACATTTATCATTCGTGTGGGTTCAGGTATTGTTATG
    TTAATGCAAGGCTACGAAAAATTAACGGGCGGATTTACGCTGAAAGGTTTAGTACCAGTC
    ATCGCTAACAATACTGATTCACCAGAGTGGTATAAGTGGTTTTTCGCAAATATAGTTGCA
    CATACGACGTCATTATTTGATATTGTTGTCCCACTCGGAGAGATTGCAATTGGATTAGGT
    TTAATTTTTGGAGTTTTTGCATATGCTGCTAGTTTCTTTGGAGCCTTTGTTATGATAAAT
    TATATCTTAGCAGATATGATATTTACGTATCCTCTTCAATTAACTTTCTTTATCCTTTTA
    CTAATGAGTCACTCATTGTTAAAACAGATTTCACTTAAAGAAATCATTAATTACTTTAGA
    GGTCGTAAGAACAGAGGTGAAAAAATAGATGACCCACTTACTGATCGTGGATGA
    60
    120
    180
    240
    300
    360
    420
    474

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL0767 [new locus tag: SACOL_RS03940 ]
  • symbol: SACOL0767
  • description: hypothetical protein
  • length: 157
  • theoretical pI: 9.33884
  • theoretical MW: 17664.9
  • GRAVY: 0.638217

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108426: hypothetical protein 
  • PFAM:
    DoxD-like (CL0131) DoxX; DoxX (PF07681; HMM-score: 35.5)
    no clan definedOxidored_q2; NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (PF00420; HMM-score: 12.6)
    NfeD-like (CL0252) NfeD; NfeD-like C-terminal, partner-binding (PF01957; HMM-score: 7.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.204
    • Ymax_pos: 11
    • Cmax: 0.146
    • Cmax_pos: 22
    • Smax: 0.499
    • Smax_pos: 4
    • Smean: 0.425
    • D: 0.29
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNKLLLLVTFIIRVGSGIVMLMQGYEKLTGGFTLKGLVPVIANNTDSPEWYKWFFANIVAHTTSLFDIVVPLGEIAIGLGLIFGVFAYAASFFGAFVMINYILADMIFTYPLQLTFFILLLMSHSLLKQISLKEIINYFRGRKNRGEKIDDPLTDRG

Experimental data[edit source | edit]

  • experimental localization: Integral membrane [1]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: SaeR
    SaeR (TF) important in Virulence  RegPrecise    transcription unit transferred from N315 data RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int. J. Med. Microbiol.: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

Relevant publications[edit source | edit]