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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13165 [old locus tag: SACOL2514 ]
  • pan locus tag?: SAUPAN006130000
  • symbol: SACOL_RS13165
  • pan gene symbol?: gntP
  • synonym:
  • product: gluconate permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS13165 [old locus tag: SACOL2514 ]
  • symbol: SACOL_RS13165
  • product: gluconate permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2572964..2574322
  • length: 1359
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2572964..2574322) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTTAACGAAATATGGCCGTTAATCAGTGTTGTTTTAGGTATCGTTATTTTATTAGTA
    TTAATTATTGGGTTTAAATTAAATACATTTATTTCATTAATTATCACATCGATGATTACA
    GCGTTAATGCTAGGTATACCATTGACTAAAATTATGGAGACGATTGAGAAAGGAATGGGC
    AGTACGCTCGGCCACATTGCACTGATATTCGGTTTAGGTGCCATACTTGGGAAATTGCTT
    GCTGATGGTGGTGGTGCAACTCGAATCGCAGACACGTTGATTCAAAAATTTGGTCAAAAA
    CATGTACAATGGGCAATGCTTGTTGCAGCATTTATCGTCGGTATTGCATTGTTCTTTGAA
    GTAGGTTTAGTCTTACTGATTCCATTAGTATTTACAGTAGCAAAACGCGCAAATGTTTCA
    GTGTTAAAACTAGGACTACCTATGGTAACAGCTTTATCAGTGACACATGGCTTTTTACCA
    CCACATCCAGGACCGGTAGTCATCGCAAAAGAATTAAAGGCAAATGTTGGAGATGTATTA
    CTGTATGGTATGATTATTGCCATTCCAGTTACACTCATTGCAGGGCCTATATTTAACAAA
    GTTGCACAAAAAATGATTCCGTCTGCGTATACACGAGAAGGCGATATTTCAGCGTTAGGT
    GCACAAAAAGAATTTACGGATCAAGAGATGCCAGGATTTGGTATGAGTTTATTAACAGCA
    ACATTACCAGTCATATTAATGTTAGTGTCTACGATAACGCAACTTGTAACTGGGCATGAC
    AAACCTACAAATCTATTTGAATCTATCATTTATATGATAGGAACAGCAGGGACAGCCATG
    CTAATAGCAGTATTATTTGCAATCGTTACGATGGGATTAATGAGAAAGCGTAAGATGAAT
    CATATTATGGAATCAGTGACGAATGCGATTTATCCAATCGGAATGATGTTATTGATTATT
    GGCGGTGGCGGTACATTTAAACAAGTATTAATTGACGGCGGTGTCGGAAATACAATTGCT
    AAAATGTTTGAAGGTACAGAGATGTCTCCGATTTTACTAGCATGGATTGTTGCAGCTGTG
    CTACGTATCGCATTAGGTTCGGCTACAGTAGCTGCGATTTCAACTACAGGTATTGTCTTA
    CCATTATTACAATCATCAGATGTAAATGTTGCATTAGTTGTACTTGCGATAGGTGCAGGT
    AGTGTGATTTTGTCTCATGTAAATGACGCAGGATTTTGGATGTTTAAAGAATATTTTGGT
    TTAACTGTAAAAGAAACATTCTTAACATGGTCATTATTAGAAACGATTATTTCCGTTTCA
    GGTATCATCTTCATTTTATTCATTAGCTTATTTGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
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    720
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    840
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    960
    1020
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    1140
    1200
    1260
    1320
    1359

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS13165 [old locus tag: SACOL2514 ]
  • symbol: SACOL_RS13165
  • description: gluconate permease
  • length: 452
  • theoretical pI: 9.2587
  • theoretical MW: 48102.9
  • GRAVY: 1.02942

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidstransporter, gluconate:H+ symporter (GntP) family (TIGR00791; HMM-score: 600.4)
  • TheSEED:
  • PFAM:
    IT (CL0182) GntP_permease; GntP family permease (PF02447; HMM-score: 570.6)
    CitMHS; Citrate transporter (PF03600; HMM-score: 72.3)
    Na_H_antiport_2; Na+-H+ antiporter family (PF13726; HMM-score: 16.9)
    no clan definedTim17; Tim17/Tim22/Tim23/Pmp24 family (PF02466; HMM-score: 10.6)
    IT (CL0182) DctM; Tripartite ATP-independent periplasmic transporter, DctM component (PF06808; HMM-score: 7.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.101
    • Ymax_pos: 11
    • Cmax: 0.122
    • Cmax_pos: 29
    • Smax: 0.162
    • Smax_pos: 3
    • Smean: 0.099
    • D: 0.1
  • predicted transmembrane helices (TMHMM): 12

Accession numbers[edit source | edit]

  • GI: 446403570 NCBI
  • RefSeq: WP_000481425 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS13165 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]