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Summary[edit source | edit]

  • pan ID?: SAUPAN001154000
  • symbol?: rbsK
  • description?: ribokinase

      descriptions from strain specific annotations:

    • ribokinase
    • putative ribokinase
  • strand?: -
  • coordinates?: 1426110..1427027
  • synteny block?: BlockID0006740
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0253 (rbsK)
    N315:
    SA0258 (rbsK)
    NCTC8325:
    Newman:
    NWMN_0202 (rbsK)
    USA300_FPR3757:
    04-02981:
    SA2981_0268 (rbsK)
    08BA02176:
    C248_0258
    11819-97:
    MS7_0258 (rbsK)
    71193:
    ST398NM01_0283
    ECT-R 2:
    ECTR2_229 (rbsK)
    ED133:
    SAOV_0209 (rbsK)
    ED98:
    SAAV_0236 (rbsK)
    HO 5096 0412:
    SAEMRSA15_02280
    JH1:
    SaurJH1_0259
    JH9:
    SaurJH9_0253
    JKD6008:
    SAA6008_00243 (rbsK)
    JKD6159:
    SAA6159_00247 (rbsK)
    LGA251:
    SARLGA251_02330
    M013:
    M013TW_0249
    MRSA252:
    SAR0266
    MSHR1132:
    SAMSHR1132_02350
    MSSA476:
    SAS0245
    Mu3:
    SAHV_0267 (rbsK)
    Mu50:
    SAV0268 (rbsK)
    MW2:
    MW0244 (rbsK)
    RF122:
    SAB0208c
    ST398:
    SAPIG0283 (rbsK)
    T0131:
    SAT0131_00263
    TCH60:
    HMPREF0772_10232 (rbsK)
    TW20:
    SATW20_02710
    USA300_TCH1516:
    USA300HOU_0280 (rbsK)
    VC40:
    SAVC_01085

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFI
    N315            MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFI
    NCTC8325        MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFI
    Newman          MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFI
    USA300_FPR3757  MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFI
                    ************************************************************

    COL             TKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMT
    N315            TKIGTDGVADFILEDFKAAHIDTSYIIKTTEAKTGQAFITVNAEGQNTIYVYGGANMTMT
    NCTC8325        TKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMT
    Newman          TKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMT
    USA300_FPR3757  TKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMT
                    *****************.***********:******************************

    COL             PEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLI
    N315            PEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLI
    NCTC8325        PEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLI
    Newman          PEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLI
    USA300_FPR3757  PEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLI
                    ************************************************************

    COL             DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIE
    N315            DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIE
    NCTC8325        DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIE
    Newman          DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIE
    USA300_FPR3757  DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIE
                    *********************************:**************************

    COL             AYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE
    N315            AYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE
    NCTC8325        AYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE
    Newman          AYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE
    USA300_FPR3757  AYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE
                    ************************************************************

    COL             VNQV
    N315            VNQV
    NCTC8325        VNQV
    Newman          VNQV
    USA300_FPR3757  VNQV
                    ****