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Summary[edit source | edit]

  • pan ID?: SAUPAN003376000
  • symbol?: rnhC
  • description?: ribonuclease HIII

      descriptions from strain specific annotations:

    • ribonuclease HIII
    • putative ribonuclease
  • strand?: -
  • coordinates?: 3739984..3740925
  • synteny block?: BlockID0024590
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1150 (rnhC)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1096
    08BA02176:
    C248_1167
    11819-97:
    MS7_1096 (rnhC)
    71193:
    ST398NM01_1136
    ECT-R 2:
    ECTR2_994 (rnhC)
    ED133:
    SAOV_1136c
    ED98:
    SAAV_1107 (rnhC)
    HO 5096 0412:
    SAEMRSA15_09700
    JH1:
    SaurJH1_1221
    JH9:
    SaurJH9_1199
    JKD6008:
    SAA6008_01094 (rnhC)
    JKD6159:
    SAA6159_00994 (rnhC)
    LGA251:
    SARLGA251_10520
    M013:
    M013TW_1073
    MRSA252:
    SAR1113
    MSHR1132:
    SAMSHR1132_09860
    MSSA476:
    SAS1074
    Mu3:
    SAHV_1131
    Mu50:
    SAV1140
    MW2:
    MW1023
    RF122:
    SAB1004c
    ST398:
    SAPIG1136 (rnhC)
    T0131:
    SAT0131_01182
    TCH60:
    HMPREF0772_12093 (rnhC)
    TW20:
    SATW20_11340 (rnhC)
    USA300_TCH1516:
    USA300HOU_1075 (rnhC)
    VC40:
    SAVC_04865

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
    N315            MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
    NCTC8325        MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
    Newman          MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
    USA300_FPR3757  MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
                    ********************:***************************************

    COL             SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
    N315            SKELLPQHSQLNTNKTKKKNMANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
    NCTC8325        SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
    Newman          SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
    USA300_FPR3757  SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
                    *:********************** ***********************************

    COL             KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
    N315            KEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMK
    NCTC8325        KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
    Newman          KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
    USA300_FPR3757  KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
                    *******************************:***********:****************

    COL             AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
    N315            AVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
    NCTC8325        AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
    Newman          AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
    USA300_FPR3757  AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
                    *.**********************************************************

    COL             IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
    N315            IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
    NCTC8325        IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
    Newman          IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
    USA300_FPR3757  IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
                    ************:******** **************************************

    COL             NREKAQKILKPL
    N315            NREKAQKILKPL
    NCTC8325        NREKAQKILKPL
    Newman          NREKAQKILKPL
    USA300_FPR3757  NREKAQKILKPL
                    ************