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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003552000
- symbol?: hslU
- synonym: clpY
- description?: ATP-dependent protease ATP-binding subunit HslU
- ATP-dependent protease ATP-binding subunit HslU
- HslU--HslV peptidase ATPase subunit
- ATP-dependent protease ATPase subunit HslU
- ATP-dependent hsl protease ATP-binding subunit HslU
- putative ATP-dependent protease ATP-bindingsubunit
- ATP-dependent carboxylate-amine ligase
- ATP-dependent endopeptidase hsl ATP-binding subunit
- ATP-dependent protease ATP-binding subunit of heat shock protein
- heat shock protein HslVU, ATPase subunit HslU
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3888423..3889835
- synteny block?: BlockID0026290
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1212 (clpY)
08BA02176:
C248_1285
11819-97:
MS7_1212 (hslU)
6850:
RSAU_001136 (hslU)
71193:
ST398NM01_1256
ECT-R 2:
ECTR2_1110 (hslU)
ED133:
SAOV_1256
ED98:
SAAV_1228 (hslU)
HO 5096 0412:
SAEMRSA15_10870
JH1:
SaurJH1_1339 (hslU)
JH9:
SaurJH9_1314 (hslU)
JKD6008:
SAA6008_01209 (hslU)
JKD6159:
SAA6159_01109 (hslU)
LGA251:
SARLGA251_11650 (HslU)
M013:
M013TW_1194
MRSA252:
SAR1230 (hslU)
MSHR1132:
SAMSHR1132_10970
MSSA476:
SAS1188 (hslU)
Mu3:
SAHV_1244 (hslU)
Mu50:
SAV1254 (hslU)
MW2:
MW1137 (hslU)
RF122:
SAB1116 (hslU)
ST398:
SAPIG1256 (hslU)
T0131:
SAT0131_01305
TCH60:
HMPREF0772_11976 (hslU)
TW20:
SATW20_12480 (HslU)
USA300_TCH1516:
USA300HOU_1185 (hslU)
VC40:
SAVC_05435 (hslU)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMI
N315 MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMI
NCTC8325 MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMI
Newman MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMI
USA300_FPR3757 MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMI
************************************************************
COL GPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKK
N315 GPTGVGKTEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKK
NCTC8325 GPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKK
Newman GPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKK
USA300_FPR3757 GPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKK
********************************:***************************
COL SLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEI
N315 SLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEI
NCTC8325 SLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEI
Newman SLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEI
USA300_FPR3757 SLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEI
************************************************************
COL KTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREV
N315 KTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREV
NCTC8325 KTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREV
Newman KTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREV
USA300_FPR3757 KTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREV
************************************************************
COL AVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG
N315 AVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG
NCTC8325 AVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG
Newman AVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG
USA300_FPR3757 AVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG
************************************************************
COL VQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS
N315 VQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS
NCTC8325 VQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS
Newman VQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS
USA300_FPR3757 VQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS
************************************************************
COL VEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLH
N315 VEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLH
NCTC8325 VEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLH
Newman VEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLH
USA300_FPR3757 VEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLH
************************************************************
COL TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL
N315 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL
NCTC8325 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL
Newman TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL
USA300_FPR3757 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL
***********************************************