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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 23-MAY-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
  • pan locus tag?:
  • symbol: traG
  • pan gene symbol?:
  • synonym:
  • product: transfer complex protein TraG

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
  • symbol: traG
  • product: transfer complex protein TraG
  • replicon: pUSA03
  • strand: +
  • coordinates: 15827..16903
  • length: 1077
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTGGAGTGCTATTGCTAAAGGAATAACAATGCTGATGAAGAAAAAAGCATTATCCAAA
    ATATTAAAACCAGTAATAGCTATAGTAATAGGCTTTTTCCTTCTTATTTTTATAATGATT
    GCTTATCTAGTAGGATCTTTCACTAAAGAAATTAATGAGAGTGGCGAACAAAAAATGAAA
    GAGGCTGAATCAACAGCAACAGGTGCGTGTACTGGTGGAAGTGTTGACGGTTCGGGTATC
    TCTGCTTTTGAAAAAAACGCCAAAGGTGGCGCATTAGAAGGTAAAGGTAAGGATATGGTT
    AAAATTGCTAAAAAAAATAAAATACCACCAAAATTATTTATAGCAATTGTAGCTTCTGAG
    TCAGAATGGGGAAGAGGGGCAAATGCAACAAAACAAAAAAACCCCCTATCTATAATGGGG
    GCTGGCCCTCTACAAGTTTACCCTTCAATTGAAGAAGGACTTGATAAAGGTGCAAAAAAT
    TTATATGACTTATACATTTCTGAAGGTTTGACAACTCCCGAGAAAATCGGGCCAAAATAC
    GCACCAGTAGGCGCTAGTAATGACCCAGATGACTTAAATAGTAACTGGGTACCTACAGTT
    AAGAAAATCATGAAGTCATTCGGTGGCAAAGAGGCTAAATGTTCTACTGAAAGCAGTGGT
    GGAGGTTCAGACGGAAAAGGATTTGATTTTAAAGGAGAATTCCCTAAACCTGACAAATCG
    AAATATAACGGTCAATCTTATCCATGGGGACAGTGTACTTGGTATGTACATCAACGTAGA
    AAAGAAATTGGCAAACCAGTACCTTTAACTTGGGGTAATGGTGGGGACTGGGGCGATAAT
    GCAAAAGCGCAAGGCTGGGAAGTAGGTAGTAAGCCGAAAGCTGGCGCTGGCGCCTCTGTA
    AAACCCGGTAACTTTGGCGCACCACCACCGTATGGACACATCATGTTTGTCGAAAAAGTT
    AAAAAAGACGGTGGAATTGTAGTTAGTGAGGCCAATGTAAAAGGCCTAGGAGTTATAAGT
    TCAAGAGAATTTTCAAAAGCAGAAACACAACGTATGCAATTTATTTATGATAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1077

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
  • symbol: TraG
  • description: transfer complex protein TraG
  • length: 358
  • theoretical pI: 10.0211
  • theoretical MW: 38301.8
  • GRAVY: -0.391899

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesSporulation and germinationputative sporulation protein YtaF (TIGR02840; HMM-score: 13.3)
    MetabolismTransport and binding proteinsAmino acids, peptides and aminesoligopeptide transporter, OPT family (TIGR00733; HMM-score: 11)
  • TheSEED:  
    Secretory antigen SsaA-like protein transposon-related 
  • PFAM:
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 58.1)
    Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 39.1)
    no clan definedT2SSF; Type II secretion system (T2SS), protein F (PF00482; HMM-score: 7.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0.03
    • Cytoplasmic Membrane Score: 0.77
    • Cellwall Score: 9.14
    • Extracellular Score: 0.06
    • Internal Helix: 1
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: ATGACTG
  • SignalP: no predicted signal peptide
    • Ymax: 0.21
    • Ymax_pos: 18
    • Cmax: 0.133
    • Cmax_pos: 47
    • Smax: 0.479
    • Smax_pos: 10
    • Smean: 0.364
    • D: 0.27
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MWSAIAKGITMLMKKKALSKILKPVIAIVIGFFLLIFIMIAYLVGSFTKEINESGEQKMKEAESTATGACTGGSVDGSGISAFEKNAKGGALEGKGKDMVKIAKKNKIPPKLFIAIVASESEWGRGANATKQKNPLSIMGAGPLQVYPSIEEGLDKGAKNLYDLYISEGLTTPEKIGPKYAPVGASNDPDDLNSNWVPTVKKIMKSFGGKEAKCSTESSGGGSDGKGFDFKGEFPKPDKSKYNGQSYPWGQCTWYVHQRRKEIGKPVPLTWGNGGDWGDNAKAQGWEVGSKPKAGAGASVKPGNFGAPPPYGHIMFVEKVKKDGGIVVSEANVKGLGVISSREFSKAETQRMQFIYDK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]