NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS05345 [old locus tag: SA0943 ]
- pan locus tag?: SAUPAN003316000
- symbol: SA_RS05345
- pan gene symbol?: —
- synonym:
- product: cell-wall-binding lipoprotein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS05345 [old locus tag: SA0943 ]
- symbol: SA_RS05345
- product: cell-wall-binding lipoprotein
- replicon: chromosome
- strand: +
- coordinates: 1070045..1070671
- length: 627
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (1070045..1070671) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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601ATGAAATTTGGAAAAACAATCGCAGTAGTATTAGCATCTAGTGTCTTGCTTGCAGGATGT
ACTACGGATAAAAAAGAAATTAAGGCATATTTAAAGCAAGTGGATAAAATTAAAGACGAT
GAAGAACCAATTAAAACTGTTGGTAAGAAAATTGCTGAATTAGATGAGAAAAAGAAAAAA
TTAACTGAAGATGTCAATAGTAAAGATACAGCAGTTCGCGGTAAAGCAGTAAAAGATTTA
ATTAAAAATGCCGATGATCGTCTAAAGGAATTTGAAAAAGAAGAAGACGCAATTAAGAAG
TCTGAACAAGACTTTAAGAAAGCAAAAAGTCACGTTGATAACATTGATAATGATGTTAAA
CGTAAAGAAGTAAAACAATTAGATGATGTATTAAAAGAAAAATACAAATTGCATGGTGAA
TACGCGAAAGCATATAAAAAGGCTGTAAACTCAGAGAAAACATTATTTAAATATTTAAAT
CAAAATGACGCGACACAACAAGGTGTTAACGAAAAATCAAAAGCAATAGAACAGAACTAT
AAAAAGTTAAAAGAAGTATCAGATAAGTATACGAAAGTACTAAATAAGGTTGGTAAAGAA
AAGCAAGACGTTGATCAATTTAAATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS05345 [old locus tag: SA0943 ]
- symbol: SA_RS05345
- description: cell-wall-binding lipoprotein
- length: 208
- theoretical pI: 9.96393
- theoretical MW: 23859.2
- GRAVY: -1.06394
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Cellular processesCell divisionchromosome segregation protein SMC (TIGR02169; HMM-score: 14.9)DNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02169; HMM-score: 14.9)type VII secretion effector, TIGR04197 family (TIGR04197; HMM-score: 12.8)Cellular processesBiosynthesis of natural productsNHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 8.4)Transport and binding proteinsAmino acids, peptides and aminesNHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 8.4)SH3 domain protein (TIGR04211; HMM-score: 8.2)two transmembrane protein (TIGR04527; HMM-score: 8.1)Mobile and extrachromosomal element functionsPlasmid functionsconjugative transfer region lipoprotein, TIGR03751 family (TIGR03751; HMM-score: 6.3)phage lysis regulatory protein, LysB family (TIGR03495; HMM-score: 5)
- TheSEED:
- PFAM: no clan definedYkyA; Putative cell-wall binding lipoprotein (PF10368; HMM-score: 171.4)Mce4_CUP1; Cholesterol uptake porter CUP1 of Mce4, putative (PF11887; HMM-score: 18.8)BORCS7; BLOC-1-related complex sub-unit 7 (PF16088; HMM-score: 13.1)BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 12.1)TerB (CL0414) TerB; Tellurite resistance protein TerB (PF05099; HMM-score: 12)no clan definedEzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 11.8)BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 11.7)no clan definedDASH_Duo1; DASH complex subunit Duo1 (PF08651; HMM-score: 10.4)DUF3452; Domain of unknown function (DUF3452) (PF11934; HMM-score: 10.4)T3SSipB; Type III cell invasion protein SipB (PF16535; HMM-score: 10.4)DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 9.9)IL31; Interleukin 31 (PF15209; HMM-score: 9.6)P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 8.8)Golgi-transport (CL0145) BAR_3; BAR domain of APPL family (PF16746; HMM-score: 7.6)no clan definedIncA; IncA protein (PF04156; HMM-score: 7)V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 6.5)Med4; Vitamin-D-receptor interacting Mediator subunit 4 (PF10018; HMM-score: 6.5)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helices: 0
- LocateP:
- SignalP: Signal peptide length 26 aa
- Ymax: 0.344
- Ymax_pos: 26
- Cmax: 0.2
- Cmax_pos: 26
- Smax: 0.793
- Smax_pos: 6
- Smean: 0.669
- D: 0.471
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHGEYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVGKEKQDVDQFK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS05345 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]