PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS12325 [old locus tag: SA2146 ]
• pan locus tag^?: SAUPAN005861000
• symbol: SA_RS12325
• pan gene symbol^?: tcaA
• synonym:
• product: zinc ribbon domain-containing protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS12325 [old locus tag: SA2146 ]
• symbol: SA_RS12325
• product: zinc ribbon domain-containing protein
• replicon: chromosome
• strand: -
• coordinates: 2411587..2412969
• length: 1383
• essential: no DEG other strains

⊟Accession numbers

• Location: NC_002745 (2411587..2412969) NCBI
• BioCyc: G1G21-2500 BioCyc
• MicrobesOnline: see SA2146

⊟Phenotype

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⊟DNA sequence

• 1
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  121
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  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  1081
  1141
  1201
  1261
  1321
  1381
  
  ATGAAATCTTGCCCGAAGTGCGGACAACAAGCACAAGATGATGTACAGATATGTACACAA
  TGTGGACATAAATTTGATAGTCGTCAAGCATTATATAGAAAGTCAACCGATGAAGATATA
  CAAACTAATAACATCAAGATGAGAAAAATGGTGCCTTGGGCAATTGGTTTTTTCATTTTA
  ATCTTAATTATTATATTGTTCTTTTTACTAAGAAACTTCAATTCACCTGAAGCGCAAACT
  AAAATATTAGTGAATGCGATTGAGAATAATGATAAACAAAAAGTAGCAACATTATTAAGT
  ACTAAAGATAATAAAGTAGATTCTGAAGAAGCGAAAGTATACATTAACTATATCAAAGAT
  GAAGTTGGGCTTAAGCAATTTGTCAGCGACCTTAAAAATACGGTACATAAATTGAATAAG
  AGTAAGACCAGCGTAGCTTCTTATATTCAAACCAGATCTGGTCAAAATATATTACGTGTA
  AGTAAAAATGGCACGCGTTATATCTTTTTCGATAATATGAGCTTTACTGCACCTACCAAG
  CAACCAATTGTTAAGCCGAAAGAAAAAACAAAATATGAGTTTAAATCTGGTGGTAAGAAA
  AAGATGGTTATAGCTGAAGCAAATAAAGTGACGCCAATAGGTAATTTTATACTGGGGACA
  TATAGAATTCCAGCTATGAAATCAACTGAGAACGGTGATTTTGCAGGCTATTTAAAATTT
  GATTTTAGACAAAGTAATTCTGAAACGGTAGATGTTACTGAAGATTTTGAAGAAGCAAAT
  ATAACTGTAACTTTAAAAGGCGATACAAAATTAAATGATAGTTCTAAAAAAGTAACTATA
  AATGACCGTGAAATGGCATTTTCAAGTTCCAAAACGTATGGTCCATATCCACAAAATAAA
  GATATTACCATTTCAGCTTCAGGTAAAGCGAAAGGTAAAACATTTACAACACAGACGAAG
  ACGATTAAAGCCAGCGATTTAAAATACAATACAGAGATAACTTTGAATTTTGACAGTGAA
  GATATCGAAGACTATGTTGAAAAGAAAGAAAAAGAAGAAAACAGCTTGAAGAACAAATTG
  ATAGAATTCTTTGCTGGATATTCTTTAGCGAATAATGCTGCGTTTAATCAGTCAGATTTT
  GATTTTGTATCGTCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGT
  GTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAAATTATAGATGCTGAAAAACAT
  GGTGATAAGATTACCGCAACCGTAAGATTAATAAATGAAAACGGTAAGCAAGTAGATAAA
  GAATATGAGCTTGAACAAGGCTCGCAAGACCGCTTGCAATTAATCAAGACATCAGAAAAA
  TAG
  60
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  1383
  

⊟Protein

⊟General

• locus tag: SA_RS12325 [old locus tag: SA2146 ]
• symbol: SA_RS12325
• description: zinc ribbon domain-containing protein
• length: 460
• theoretical pI: 9.60167
• theoretical MW: 52130.9
• GRAVY: -0.632826

⊟Function

• TIGRFAM:
  Metabolism Energy metabolism Sugars 5-deoxy-glucuronate isomerase (TIGR04378; EC 5.3.1.-; HMM-score: 15.6)
  Signal transduction Regulatory functions DNA interactions putative regulatory protein, FmdB family (TIGR02605; HMM-score: 13.7)
  and 1 more
  Cys-rich peptide, TIGR04165 family (TIGR04165; HMM-score: 5.5)
• TheSEED: see SA2146
• PFAM:
  Zn_Beta_Ribbon (CL0167) zf-ribbon_3; zinc-ribbon domain (PF13248; HMM-score: 28.3)
  zinc_ribbon_2; zinc-ribbon domain (PF13240; HMM-score: 25.3)
  and 12 more
  UPF0547; Uncharacterised protein family UPF0547 (PF10571; HMM-score: 19.3)
  DZR; Double zinc ribbon (PF12773; HMM-score: 18.5)
  Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 15.3)
  no clan defined DUF2950; Protein of unknown function (DUF2950) (PF11453; HMM-score: 14.1)
  ClpP_crotonase (CL0127) CLP_protease; Clp protease (PF00574; HMM-score: 13.9)
  no clan defined DUF1461; Protein of unknown function (DUF1461) (PF07314; HMM-score: 11.9)
  Zn_Beta_Ribbon (CL0167) zinc_ribbon_15; zinc-ribbon family (PF17032; HMM-score: 11)
  RING (CL0229) Prok-RING_1; Prokaryotic RING finger family 1 (PF14446; HMM-score: 10.9)
  Transporter (CL0375) Clc-like; Clc-like (PF07062; HMM-score: 9.9)
  Zn_Beta_Ribbon (CL0167) OrfB_Zn_ribbon; Putative transposase DNA-binding domain (PF07282; HMM-score: 9.3)
  no clan defined YhfH; YhfH-like protein (PF14149; HMM-score: 9.3)
  ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 9.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helix: 1
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.008059
  • TAT(Tat/SPI): 0.000171
  • LIPO(Sec/SPII): 0.029427
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI: 446756538 NCBI
• RefSeq: WP_000833794 NCBI
• UniProt: see SA2146

⊟Protein sequence

• MKSCPKCGQQAQDDVQICTQCGHKFDSRQALYRKSTDEDIQTNNIKMRKMVPWAIGFFILILIIILFFLLRNFNSPEAQTKILVNAIENNDKQKVATLLSTKDNKVDSEEAKVYINYIKDEVGLKQFVSDLKNTVHKLNKSKTSVASYIQTRSGQNILRVSKNGTRYIFFDNMSFTAPTKQPIVKPKEKTKYEFKSGGKKKMVIAEANKVTPIGNFILGTYRIPAMKSTENGDFAGYLKFDFRQSNSETVDVTEDFEEANITVTLKGDTKLNDSSKKVTINDREMAFSSSKTYGPYPQNKDITISASGKAKGKTFTTQTKTIKASDLKYNTEITLNFDSEDIEDYVEKKEKEENSLKNKLIEFFAGYSLANNAAFNQSDFDFVSSYIKKGSSFYDDVKKRVSKGSLMMISSPQIIDAEKHGDKITATVRLINENGKQVDKEYELEQGSQDRLQLIKTSEK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications