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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001639
- pan locus tag?: SAUPAN004255000
- symbol: mreC
- pan gene symbol?: mreC
- synonym:
- product: rod shape-determining protein MreC
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001639
- symbol: mreC
- product: rod shape-determining protein MreC
- replicon: chromosome
- strand: -
- coordinates: 1674620..1675462
- length: 843
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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841GTGCTTAAGTTTTTTAAAAATAACAAATTAATTGTTGTTTTATGTGCAATTATCGTTTTT
ATTGCATTAATTGGGCTGTCCATACGTTCACAATCTCAATCACCTCCTGAACAATATATA
GGTGATTCTGTGTCTTTTGGACAACGAGTTGTGAGTTATCCAGTTAATTTTGTTGCTGGT
ACGATTGGGGACTTTTTTAAAAAAGGAGATTCTAAAGAATCTAAAAATAAGATTAGCCAG
TTAGAATCTAAGAACCAACAATTAGAAGCGGAAAATGAAAAATTAAAAAAAGAGCTTGAT
TTAAAAGATATTTCAAAATTTGATCCTATTTCTACTACGGTTTTAGCAAGAAATCCGGAT
CAGTGGATGAATACAATTGTAATTGATAAGGGATCTAAATCAGGTATAACTTCAAATATG
GCTGTGATGACATCACAAGGTTTTGTTGGAAGAGTTACTAAAGTTAATAAATTTTCTTCA
CAAGTTGATTTAATCTCAACTAATACACGTGCGGGTAAATTATCTGTAAATATACAACAC
GGTTCTAAAAATATATTTGGTTTAATTGATCGTTATGATGAAAAGAACTCAGAACTTGTA
ATTAGTGACATTAATAATAGAGATAATATCTCAAAAGGTGATAAAGTCGTTACAAGTGGA
TTAGCTGATCAACTACCAAGTAATTTATATATAGGAGAAGTGACTAAGGTTCAAAATGAT
CAATACGGCTTAGCTAAAGAAGTTAGGGTTAAGACTGGTGCAGACTTAACAGATTTGAGT
CATGTTTATGTTGCAAAAAGAGATCCTAAAACAATTCCTGATGATGAAGGCAGGGATAAA
TAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001639
- symbol: MreC
- description: rod shape-determining protein MreC
- length: 280
- theoretical pI: 9.59859
- theoretical MW: 30980
- GRAVY: -0.3975
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan rod shape-determining protein MreC (TIGR00219; HMM-score: 146.9)and 4 moreMobile and extrachromosomal element functions Plasmid functions integrating conjugative element protein, PFL_4705 family (TIGR03752; HMM-score: 18.1)Protein fate Protein and peptide secretion and trafficking preprotein translocase, YajC subunit (TIGR00739; HMM-score: 15)integrating conjugative element protein, PFL_4669 family (TIGR03761; HMM-score: 12.1)Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 4.9)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: Peptidase_PA (CL0124) MreC; Rod shape-determining protein MreC, barrel core (PF04085; HMM-score: 136.7)and 10 moreno clan defined YajC; Preprotein translocase subunit (PF02699; HMM-score: 23.7)TSC22; TSC-22/dip/bun family (PF01166; HMM-score: 17.2)FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 15.4)no clan defined YabA; Initiation control protein YabA (PF06156; HMM-score: 15.4)bZIP (CL0018) bZIP_2; Basic region leucine zipper (PF07716; HMM-score: 15.2)bZIP_1; bZIP transcription factor (PF00170; HMM-score: 15)no clan defined Ariadne; Ariadne domain (PF19422; HMM-score: 14.6)HTH (CL0123) DUF6262; Family of unknown function (DUF6262) (PF19776; HMM-score: 14.6)TACC (CL0679) Fungal_TACC; Fungal Transforming acidic coiled-coil (TACC) proteins (PF12709; HMM-score: 14.5)no clan defined Shugoshin_N; Shugoshin N-terminal coiled-coil region (PF07558; HMM-score: 9.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0008
- Cytoplasmic Membrane Score: 0.9768
- Cell wall & surface Score: 0.0005
- Extracellular Score: 0.0219
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 32 aa
- SP(Sec/SPI): 0.795076
- TAT(Tat/SPI): 0.001816
- LIPO(Sec/SPII): 0.137729
- Cleavage Site: CS pos: 32-33. SQS-QS. Pr: 0.5493
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MLKFFKNNKLIVVLCAIIVFIALIGLSIRSQSQSPPEQYIGDSVSFGQRVVSYPVNFVAGTIGDFFKKGDSKESKNKISQLESKNQQLEAENEKLKKELDLKDISKFDPISTTVLARNPDQWMNTIVIDKGSKSGITSNMAVMTSQGFVGRVTKVNKFSSQVDLISTNTRAGKLSVNIQHGSKNIFGLIDRYDEKNSELVISDINNRDNISKGDKVVTSGLADQLPSNLYIGEVTKVQNDQYGLAKEVRVKTGADLTDLSHVYVAKRDPKTIPDDEGRDK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)