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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001763
  • pan locus tag?: SAUPAN004464000
  • symbol: arsB
  • pan gene symbol?: arsB
  • synonym:
  • product: arsenite efflux transporter membrane subunit ArsB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001763
  • symbol: arsB
  • product: arsenite efflux transporter membrane subunit ArsB
  • replicon: chromosome
  • strand: +
  • coordinates: 1816722..1818014
  • length: 1293
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGATGACAACTTTAGCGACACTCATTTTTCTAGTAACTTTATTATTTGTATTATGGCAA
    CCTAAAGGCCTAGATATTGGCATTACCGCATTAACTGGTGCCTTTATTGCTGTTATTACT
    GGTGTTGTAAGTTTTTCCGATGTTTTCGAAGTAACAGGTATTGTTTGGAATGCTACTTTG
    ACTTTTGTCTCAGTCATTCTTATTTCATTAATATTAGATAAAGTTGGATTATTCGAATGG
    TCAGCTATTCACATGCTTCATGCTTCAAAAGGCAATGGTTTAAAAATGTTCGTTTATATC
    ATATTATTGGGTGCCATTGTTGCTGCATTTTTCGCAAATGATGGCGCAGCGTTAATCTTA
    ACGCCTATTGTATTAGCGATGGTTAAAAATATAGGTTTTAGTAAGCGGGCCATATTCCCT
    TTTATTATTGCGAGTGGTTTTATAGCTGACACAACTTCTTTACCTTTGATCGTGAGCAAT
    CTAGTGAATATTATATCTGCTGATTATTTTCATATAGGATTCATTCGATATTTTAGTAGA
    ATGATTATACCTAATTTATTCTCACTTTTAGCAAGTATTATAGTATTGTGGTTATATTTT
    AGAAAGGCGATACCTAAAACGTTTGATGATAATAATATAAAGCATCCTAAAGATGCCATT
    AATGATTTAAAGCTATTTAAAATTTCATGGATTGTTCTAGTTATATTACTTTTCGGCTAT
    CTAATCAGTGAATTCACTAAAATTCCGGTATCAATTTTCACTGGAATCATTGCTTTTATT
    TTTCTAATGTTGGCTCGTAAATCAAATGCTGTAAATATTAAGCAAGTCATTAAGGGCGCA
    CCTTGGAATATAGTATTATTTTCAATTGGTATGTATATCGTCGTATTCGGCTTAAGAAAT
    GCTGGCATTACTTTAATATTGGCTAAAATATTAGAATATATTTCCAATTACGGTCTATTT
    AGCACTATTTTGGGAATGGGCTTCATTTCAGCGTTTTTATCATCAATAATGAATAATATG
    CCTACAGTTTTAATAGATGCGATTGCTATTGGTCAATCAAATGTCCATGGCATGTTAAAA
    GAAGGCCTAATTTATGCGAATGTTATCGGTTCTGATTTAGGTCCAAAAATTACACCGATA
    GGCTCTTTAGCTACATTACTGTGGTTACACGTCTTAACACAAAAAGATGTTAAGATTTCT
    TGGGGCACATACTTTAAAACTGGTATCATCATTACAATTCCAGTACTATTTATAACCCTC
    ATAGGGTTGTATCTAACACTTATCATATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1293

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001763
  • symbol: ArsB
  • description: arsenite efflux transporter membrane subunit ArsB
  • length: 430
  • theoretical pI: 10.0887
  • theoretical MW: 47299.8
  • GRAVY: 1.09163

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Detoxification arsenite/antimonite efflux pump membrane protein (TIGR00935; HMM-score: 707.1)
    Metabolism Transport and binding proteins Other arsenite/antimonite efflux pump membrane protein (TIGR00935; HMM-score: 707.1)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    IT (CL0182) ArsB; Arsenical pump membrane protein (PF02040; HMM-score: 631.4)
    and 2 more
    CitMHS; Citrate transporter (PF03600; HMM-score: 197.8)
    Na_sulph_symp; Sodium:sulfate symporter transmembrane region (PF00939; HMM-score: 32.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.045146
    • TAT(Tat/SPI): 0.000324
    • LIPO(Sec/SPII): 0.012363
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MMTTLATLIFLVTLLFVLWQPKGLDIGITALTGAFIAVITGVVSFSDVFEVTGIVWNATLTFVSVILISLILDKVGLFEWSAIHMLHASKGNGLKMFVYIILLGAIVAAFFANDGAALILTPIVLAMVKNIGFSKRAIFPFIIASGFIADTTSLPLIVSNLVNIISADYFHIGFIRYFSRMIIPNLFSLLASIIVLWLYFRKAIPKTFDDNNIKHPKDAINDLKLFKISWIVLVILLFGYLISEFTKIPVSIFTGIIAFIFLMLARKSNAVNIKQVIKGAPWNIVLFSIGMYIVVFGLRNAGITLILAKILEYISNYGLFSTILGMGFISAFLSSIMNNMPTVLIDAIAIGQSNVHGMLKEGLIYANVIGSDLGPKITPIGSLATLLWLHVLTQKDVKISWGTYFKTGIIITIPVLFITLIGLYLTLIIF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: ArsR* (repression) regulon
    ArsR*(TF)important in Arsenic resistance;  transcription unit predicted or transferred from N315 and NCTC8325 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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