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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0348 [new locus tag: SA_RS01990 ]
- pan locus tag?: SAUPAN001906000
- symbol: SA0348
- pan gene symbol?: parB
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0348 [new locus tag: SA_RS01990 ]
- symbol: SA0348
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 408141..408977
- length: 837
- essential: yes DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123127 NCBI
- RefSeq: NP_373594 NCBI
- BioCyc: see SA_RS01990
- MicrobesOnline: 102620 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781TTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATA
GATATATCGGATATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCAT
TTAAATGATTTGGCAGATTCAATTAAGCAATATGGAATTTTGCAACCAATTGTGCTTAGA
AAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCTTCGAAAATT
GCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAA
CTGGCGGTCATCGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGT
TATCAACGTTTGATGACAGATTTGAAAATTACACAACAAGAAGTAGCGAAGCGATTGAGT
AAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAAAAGATTGCT
GACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAA
GATGAACAACAAATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGA
TATTTAGAAAACCATGTTAATGAATTAAAAAATGTTTCGTCAAAGTCGGAAACAGACAAA
GTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGAGAACAGTAT
GGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGAT
TCACAAGATGACTTTGTGAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG60
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837
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0348 [new locus tag: SA_RS01990 ]
- symbol: SA0348
- description: hypothetical protein
- length: 278
- theoretical pI: 10.0767
- theoretical MW: 32512.2
- GRAVY: -0.718345
⊟Function[edit | edit source]
- TIGRFAM: nucleoid occlusion protein (TIGR04285; HMM-score: 248.8)and 3 moreParB/RepB/Spo0J family partition protein (TIGR00180; HMM-score: 195.1)PRTRC system ParB family protein (TIGR03734; HMM-score: 118.7)Mobile and extrachromosomal element functions Plasmid functions plasmid partitioning protein RepB (TIGR03454; HMM-score: 70.5)
- TheSEED :
- Chromosome (plasmid) partitioning protein ParB
Cell Division and Cell Cycle Cell Division and Cell Cycle - no subcategory Bacterial Cytoskeleton Chromosome (plasmid) partitioning protein ParBand 1 more - PFAM: ParBc (CL0248) ParBc; ParB-like nuclease domain (PF02195; HMM-score: 94.4)and 12 moreno clan defined Latarcin; Latarcin precursor (PF10279; HMM-score: 21.8)PDDEXK (CL0236) DUF1016; Protein of unknown function (DUF1016) (PF06250; HMM-score: 17.4)HTH (CL0123) KorB; KorB domain (PF08535; HMM-score: 17.1)HTH_3; Helix-turn-helix (PF01381; HMM-score: 16.7)no clan defined DUF3861; Domain of Unknown Function with PDB structure (DUF3861) (PF12977; HMM-score: 14.7)HTH (CL0123) MarR_2; MarR family (PF12802; HMM-score: 13.7)MerR_2; MerR HTH family regulatory protein (PF13591; HMM-score: 13.3)HTH_19; Helix-turn-helix domain (PF12844; HMM-score: 12.9)TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 12.5)no clan defined CbeA_antitoxin; CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A (PF06154; HMM-score: 12.5)HTH (CL0123) HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 12.1)HTH_37; Helix-turn-helix domain (PF13744; HMM-score: 9.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010282
- TAT(Tat/SPI): 0.000757
- LIPO(Sec/SPII): 0.001015
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLREQYGTKVDISIKKSVGKISFEFDSQDDFVRIIEQLNRRYGK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CodY (repression) regulon
CodY (TF) important in Amino acid metabolism; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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