Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001906000
- symbol?: parB
- synonym:
- description?: chromosome partitioning protein ParB
- chromosome partitioning protein ParB
- chromosome partioning ParB family protein
- ParB/RepB/Spo0J family partition protein
- ParB family chromosome partioning protein
- ParB-like partition protein
- spoOJ protein
- stage 0 sporulation protein J
- Chromosome (plasmid) partitioning protein ParB
- chromosome/plasmid partitioning protein ParB
- chromosome partitioning protein SpoOJ
- DNA-binding protein
- ParB family partitioning protein
- putative DNA-binding protein
- transcription terminator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2394144..2394995
- synteny block?: BlockID0012790
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0358 (parB)
08BA02176:
C248_0417 (parB)
11819-97:
MS7_0350 (spo0J)
6850:
RSAU_000305 (spo0J)
71193:
ST398NM01_0440
ECT-R 2:
ECTR2_321
ED133:
SAOV_0384
ED98:
SAAV_0328
HO 5096 0412:
SAEMRSA15_03150
JH1:
SaurJH1_0419
JH9:
SaurJH9_0408
JKD6008:
SAA6008_00337 (parB)
JKD6159:
SAA6159_00334 (parB)
LGA251:
SARLGA251_03220
M013:
M013TW_0339
MRSA252:
SAR0357
MSHR1132:
SAMSHR1132_03330
MSSA476:
SAS0336
Mu3:
SAHV_0357
Mu50:
SAV0360
MW2:
MW0336
RF122:
SAB0311
ST398:
SAPIG0440
T0131:
SAT0131_00367 (lysP)
TCH60:
HMPREF0772_10134 (spoOJ)
TW20:
SATW20_04280
USA300_TCH1516:
USA300HOU_0381
VC40:
SAVC_01550
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPI
N315 ---MSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPI
NCTC8325 MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPI
Newman MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPI
USA300_FPR3757 MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPI
:********************************************************
COL VLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEE
N315 VLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEE
NCTC8325 VLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEE
Newman VLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEE
USA300_FPR3757 VLRKTVQGYYIVVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEE
************************************************************
COL AESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLL
N315 AESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLL
NCTC8325 AESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLL
Newman AESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLL
USA300_FPR3757 AESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLL
************************************************************
COL AIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
N315 AIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
NCTC8325 AIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
Newman AIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
USA300_FPR3757 AIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
************************************************************
COL EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK
N315 EQYGTKVDISIKKSVGKISFEFDSQDDFVRIIEQLNRRYGK
NCTC8325 EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK
Newman EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK
USA300_FPR3757 EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK
*************************:***************