PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000974000
• symbol^?: capA
• synonym:
• description^?: capsular polysaccharide type 5 biosynthesis protein cap5A

  descriptions from strain specific annotations:

  • capsular polysaccharide type 5 biosynthesis protein cap5A
  • capsular polysaccharide biosynthesis protein Cap5A
  • capsular polysaccharide synthesis enzyme CapA
  • capsular polysaccharide biosynthesis protein
  • capsular polysaccharide synthesis protein Cap5A
  • capsular polysaccharide type 5/8 biosynthesis protein CapA
  • capsular polysaccharide synthesis enzyme Cap5A
  • capsular polysaccharide biosynthesis protein CapA
  • membrane protein CapA1
  • MPA1 family polysaccharide export protein
  • polysaccharide export protein, MPA1 family protein
  • truncated
  • truncated capsular polysaccharide synthesis enzyme Cap5A
• strand^?: +
• coordinates^?: 1230623..1231139
• synteny block^?: BlockID0005080
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0136 (cap5A)
N315:
SA0144 (capA)
NCTC8325:
SAOUHSC_00114
Newman:
NWMN_0095 (capA)
USA300_FPR3757:
SAUSA300_0152 (cap5A)
04-02981:
SA2981_0150 (capA)
08BA02176:
C248_0138 (capA)
11819-97:
MS7_0143
6850:
RSAU_000103 (capA1)
71193:
ST398NM01_0163
ECT-R 2:
ECTR2_106
ED133:
SAOV_0096
ED98:
SAAV_0117 (cap5A)
HO 5096 0412:
SAEMRSA15_01150 (capA)
JH1:
SaurJH1_0140
JH9:
SaurJH9_0135
JKD6008:
SAA6008_00127 (cap5A)
JKD6159:
SAA6159_00133 (cap5A)
LGA251:
SARLGA251_01230 (capA)
M013:
M013TW_0139
MRSA252:
SAR0151 (capA)
MSHR1132:
SAMSHR1132_01230
MSSA476:
SAS0124
Mu3:
SAHV_0148 (capA)
Mu50:
SAV0149 (capA)
MW2:
MW0124 (cap8A)
RF122:
SAB0090 (capA)
ST398:
SAPIG0163
T0131:
SAT0131_00139
TCH60:
HMPREF0772_10349 (cap5A)
TW20:
SATW20_01600 (capA)
USA300_TCH1516:
USA300HOU_0163 (cap5A)
VC40:
SAVC_00515

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVNQTKGDNP
  N315            MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVNQTKGDNP
  NCTC8325        MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVNQTKGDNP
  Newman          MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVNQTKGDNP
  USA300_FPR3757  MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKYQANTQILVNQTKGDNP
                  ************************************************************
  
  COL             QFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITNQENTQLINI
  N315            QFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITNQENTQLINI
  NCTC8325        QFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITNQENTQLINI
  Newman          QFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITNQENTQLINI
  USA300_FPR3757  QFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSKLSSMLTITNQENTQLINI
                  ************************************************************
  
  COL             QVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAPKTVVNLIGAFF
  N315            QVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAPKTVVNLIGAFF
  NCTC8325        QVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAPKTVVNLIGAFF
  Newman          QVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAPKTVVNLIGAFF
  USA300_FPR3757  QVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKADGTAVKVAPKTVVNLIGAFF
                  ************************************************************
  
  COL             LGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN
  N315            LGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN
  NCTC8325        LGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN
  Newman          LGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN
  USA300_FPR3757  LGLVVALIYIFFKVIFDKRIKDEEDVEKELGLPVLGSIQKFN
                  ******************************************