PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002841000
• symbol^?: int
• synonym:
• description^?: site-specific integrase

  descriptions from strain specific annotations:

  • site-specific integrase
  • integrase
  • pathogenicity island protein, integrase
  • prophage L54a integrase
• strand^?: -
• coordinates^?: 3292431..3294379
• synteny block^?: BlockID0020250
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL0885
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0799 (int)
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_0787
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00838 (int)
JKD6159:
—
LGA251:
SARLGA251_07460
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_00915 (rbsU)
TCH60:
HMPREF0772_12363 (int3)
TW20:
SATW20_08890
USA300_TCH1516:
USA300HOU_0850
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
  USA300_FPR3757  MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN
                  ******************************************************** ***
  
  COL             DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
  USA300_FPR3757  DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
                  **.******************.**************************************
  
  COL             YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
  USA300_FPR3757  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
                  **********.*************************************************
  
  COL             KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
  USA300_FPR3757  KAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
                  *************:**********************************************
  
  COL             NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
  USA300_FPR3757  NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
                  ************************************************************
  
  COL             KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
  USA300_FPR3757  KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
                  ************************************************************
  
  COL             QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
  USA300_FPR3757  QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
                  **********************************************