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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002841000
- symbol?: int
- synonym:
- description?: site-specific integrase
- site-specific integrase
- integrase
- pathogenicity island protein, integrase
- prophage L54a integrase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3292431..3294379
- synteny block?: BlockID0020250
- occurrence?: in 26% of 34 strains
intIV : metQ-converting satellite pathogenicity island site-specific integrase [1]
• A crystal structure is available : 3NKH
This satellite pathogenicity island integrase catalyzes insertion of staphylococcal satellite pathogenicity islands at the consensus attB sequence TTATTCCTGCTAAATAA within the methionine import methionine-binding protein located between metP and csbD1. MetQ-converting (type IV) satellite pathogenicity islands such as SaPI3 and SaPI1 typically encode virulence factors such as enterotoxin K and enterotoxin Q.
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_0787
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00838 (int)
JKD6159:
—
LGA251:
SARLGA251_07460
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_00915 (rbsU)
TCH60:
HMPREF0772_12363 (int3)
TW20:
SATW20_08890
USA300_TCH1516:
USA300HOU_0850
VC40:
—
⊟Genome Viewer[edit | edit source]
| COL | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
COL MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN
USA300_FPR3757 MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN
******************************************************** ***
COL DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
USA300_FPR3757 DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLS
**.******************.**************************************
COL YAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
USA300_FPR3757 YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV
**********.*************************************************
COL KAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
USA300_FPR3757 KAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ
*************:**********************************************
COL NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
USA300_FPR3757 NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENK
************************************************************
COL KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
USA300_FPR3757 KDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS
************************************************************
COL QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
USA300_FPR3757 QQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
**********************************************
- ↑ Babek Alibayov, Kamila Zdenkova, Hana Sykorova, Katerina Demnerova
Molecular analysis of Staphylococcus aureus pathogenicity islands (SaPI) and their superantigens combination of food samples.
J Microbiol Methods: 2014, 107;197-204
[PubMed:25447888] [WorldCat.org] [DOI] (I p)Mercedes Cervera-Alamar, Katerina Guzmán-Markevitch, Miglė Žiemytė, Leticia Ortí, Patricia Bernabé-Quispe, Antonio Pineda-Lucena, Javier Pemán, María Ángeles Tormo-Mas
Mobilisation Mechanism of Pathogenicity Islands by Endogenous Phages in Staphylococcus aureus clinical strains.
Sci Rep: 2018, 8(1);16742
[PubMed:30425253] [WorldCat.org] [DOI] (I e)Andreas F Haag, Magdalena Podkowik, Rodrigo Ibarra-Chávez, Francisca Gallego Del Sol, Geeta Ram, John Chen, Alberto Marina, Richard P Novick, José R Penadés
A regulatory cascade controls Staphylococcus aureus pathogenicity island activation.
Nat Microbiol: 2021, 6(10);1300-1308
[PubMed:34518655] [WorldCat.org] [DOI] (I p)