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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003322000
- symbol?: —
- synonym:
- description?: XRE family transcriptional regulator
- XRE family transcriptional regulator
- Cro/CI family transcriptional regulator
- helix-turn-helix transcriptional regulator
- HTH_XRE-type transcriptional regulator
- putative DNA-binding protein
- Cro/CI family transcriptional regulator protein
- DNA-binding protein
- helix-turn-helix family protein
- MerR family transcriptional regulator, nearpolyamine transporter
- Spermidine/putrescine transport operon transcriptional regulator
- transcriptional regulator, Cro/CI family
- transcriptional regulator Cro/CI family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3689953..3690492
- synteny block?: BlockID0024060
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1055
08BA02176:
C248_1125
11819-97:
MS7_1055
6850:
RSAU_000983
71193:
ST398NM01_1095
ECT-R 2:
ECTR2_953
ED133:
SAOV_1042
ED98:
SAAV_1063
HO 5096 0412:
SAEMRSA15_09280
JH1:
SaurJH1_1180
JH9:
SaurJH9_1158
JKD6008:
SAA6008_01053
JKD6159:
SAA6159_00954
LGA251:
SARLGA251_10110
M013:
M013TW_1030
MRSA252:
SAR1072
MSHR1132:
SAMSHR1132_09450
MSSA476:
SAS1033
Mu3:
SAHV_1090
Mu50:
SAV1098
MW2:
MW0981
RF122:
SAB0964
ST398:
SAPIG1095
T0131:
SAT0131_01136
TCH60:
HMPREF0772_12134
TW20:
SATW20_10930
USA300_TCH1516:
USA300HOU_1041
VC40:
SAVC_04650
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
N315 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
NCTC8325 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
Newman MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
USA300_FPR3757 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE
************************************************************
COL FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
N315 FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
NCTC8325 FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
Newman FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
USA300_FPR3757 FFKDSENEKVLYKKEEQVIYDEYDEGYILNWLVSKSNEYDMEPLILTLKPGASYKNFNPS
************************************************************
COL ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
N315 ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
NCTC8325 ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
Newman ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
USA300_FPR3757 ESDTFIYCMSGQITLNLGKEIYQAQEEDVLYFKARDNHRLSNESNNETRILIVATASYL
***********************************************************