From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • pan locus tag?: SAUPAN002575000
  • symbol: SA_RS03690
  • pan gene symbol?: —
  • synonym:
  • product: deoxyribodipyrimidine photo-lyase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • symbol: SA_RS03690
  • product: deoxyribodipyrimidine photo-lyase
  • replicon: chromosome
  • strand: +
  • coordinates: 740268..741641
  • length: 1374
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (740268..741641) NCBI
  • BioCyc: SA_RS03690 BioCyc
  • MicrobesOnline: see SA0646

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGCAATTGCTGTGTTATTAAATCGAATGTTTCGAATGGAACACAATCCATTATTTGAA
    TATATTTATCAACAAAAAGAAGACATTGATGCATGTTATTTTATCATTCCGGAAGAGGAC
    ATGTCTTCAGCTTCTGATTTGAAAGCACAGTTTTATCGCGGTACTTTGCAGCGCTTTTAC
    CAATCGTTGCACGCAGAAAAGCTTACACCTTATGTTATGTCTTATGACGATATCATTTCA
    TTTTGTAAAGAGAACAATATCTCTGAAGTAGTGATTGCGGGTGATATTATGAGTTATCAT
    CTTGAAGAATATGATATTTTACATCAACGTTCTTTATTCAATGAAGCACGTATTGCCGTT
    ACTTTAATTCGTGGGAATCATTACTTTAAAGCGAGTAAAACAATGAATCAACAAGGGGAG
    CCATACAAAGTTTTTACTAGTTTCTATAGAAAATGGCGACCTTACTTGAGGCATAGAGAC
    GTATATCACTATGATTTAAAATCATTCGAAGACTTTGTCATTGCATCACCTGATGATTTA
    GTGTTTGATGACATAGCGTTTGGATCCTCACAAGTAATTGAACAGAATAAATGGCAACAT
    TTTTTAGATCAAGATATACAGAATTACGAAAGCGGAAGAGACTATTTACCTGAAGTGTTA
    ACAAGTCAGCTAAGTGTTGCTTTAGCATATGGATTATTAGATATTATTGAAATTTTTAAT
    GATTTATTGGCGCGTTATGATGAAGATGAGGCAAACCATGAAGCATTTATACGTGAACTC
    ATTTTTAGAGAATTTTATTATGTGTTAATGACACAGTATCCAGAAACCTCATACCAAGCT
    TTCAAACCTAAATATCGACAGATAAAATGGTCGCAAAATGAAGCGAATTTTAATGCATGG
    TGCGAAGGGCAAACAGGATTTCCAATCATTGATGCAGCAATAATGGAATTGACACAAACT
    GGTTTTATGCATAATCGAATGAGAATGGTTGTGTCGCAATTTTTAACCAAAGATTTATTT
    ATAGATTGGACATGGGGAGAAAAATTCTTTAGAAAGCACCTTATTGACTATGATGCAGCA
    TCAAATATTCATGGATGGCAATGGTCTGCTTCTACAGGTACGGATGCAGTGCCGTATTTT
    AGAATGTTTAATCCAATAAGACAGAGTGAACGCTTTGATGCTAAAGCTTTGTATATCAAA
    ACATATCTTCCGATTTTTAATCAAATTGATGCAAAATATTTGCATGATACACAACGCAAT
    GAGTCCAACCTTTTTGAACAGGGGATTGAATTAGGTAGTCATTATCCAAGACAAATGGTA
    GATCATCAAGAAAAACGTACACAAGTTTTAGCTACATTTAAAGCGCTAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • symbol: SA_RS03690
  • description: deoxyribodipyrimidine photo-lyase
  • length: 457
  • theoretical pI: 5.12816
  • theoretical MW: 54383
  • GRAVY: -0.444639

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photo-lyase, 8-HDF type (TIGR03556; EC 4.1.99.3; HMM-score: 248.9)
    and 4 more
    Cellular processes Cellular processes Adaptations to atypical conditions cryptochrome, DASH family (TIGR02765; HMM-score: 149.9)
    cryptochrome, plant family (TIGR02766; HMM-score: 148.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photolyase (TIGR00591; EC 4.1.99.3; HMM-score: 17.2)
    Unknown function Enzymes of unknown specificity putative phosphoesterase (TIGR00024; EC 3.1.-.-; HMM-score: 17.1)
  • TheSEED: see SA0646
  • PFAM:
    no clan defined FAD_binding_7; FAD binding domain of DNA photolyase (PF03441; HMM-score: 250.4)
    and 3 more
    HUP (CL0039) DNA_photolyase; DNA photolyase (PF00875; HMM-score: 44.8)
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 17.6)
    no clan defined PHINT_rpt; Phage-integrase repeat unit (PF14882; HMM-score: 8.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001389
    • TAT(Tat/SPI): 0.000095
    • LIPO(Sec/SPII): 0.000339
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS03690&oldid=99093"