From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12155 [old locus tag: NWMN_2101 ]
  • pan locus tag?: SAUPAN005595000
  • symbol: NWMN_RS12155
  • pan gene symbol?: cobB
  • synonym:
  • product: NAD-dependent protein deacylase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12155 [old locus tag: NWMN_2101 ]
  • symbol: NWMN_RS12155
  • product: NAD-dependent protein deacylase
  • replicon: chromosome
  • strand: +
  • coordinates: 2338620..2339360
  • length: 741
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2338620..2339360) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2101

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    GTGTTTAACTTGAAACATGATTTAGAGACACTAAAACATATTATAGATAGTTCGAATCGT
    ATTACATTTTTTACAGGTGCTGGTGTATCTGTCGCAAGTGGCGTTCCAGATTTCCGTTCA
    ATGGGTGGCTTATTTGATGAAATTTCAAAAGATGGGCTTTCGCCAGAATACTTGTTAAGC
    CGTGATTATTTAGAAGATGATCCTGAAGGTTTTATCAATTTCTGCCATAAGCGCTTACTA
    TTTGTCGATACGATGCCCAATATCGTTCATGATTGGATTGCAAAATTAGAACGTAATCAA
    CAATCTTTAGGTGTCATCACGCAAAATATCGATGGTTTGCACTCAGACGCTGGAAGTCAA
    CATGTTGATGAATTACATGGCACGTTAAATCGTTTTTATTGTAATGTATGTCATAAATCT
    TATACGAAGTCAGATGTTATTGATAGAACTTTGAAACATTGTGATAATTGTGGTGGTGCC
    ATTCGACCGGACATCGTATTATACGGTGAAATGTTAGATCAACCTACCATCATAAGGGCA
    TTAAATAAAATTGAACATGCTGACACCCTTGTTGTACTAGGTTCATCACTCGTTGTACAA
    CCTGCCGCAGGATTAATATCACATTTTAAAGGCGACAATTTAATTATTATCAATAAAGAT
    CGAACACCTTATGATAGCGACGCTACTTTGGTCATACATGACGACATGGTTTCCGTTGTA
    AAATCATTAATGACAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    741

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS12155 [old locus tag: NWMN_2101 ]
  • symbol: NWMN_RS12155
  • description: NAD-dependent protein deacylase
  • length: 246
  • theoretical pI: 5.27118
  • theoretical MW: 27426
  • GRAVY: -0.138211

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.1.-?  ExPASy
    NAD+ + an acetylprotein = nicotinamide + O-acetyl-ADP-ribose + a protein?
  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    FAD_DHS (CL0085) SIR2; Sir2 family (PF02146; HMM-score: 184.2)
    and 3 more
    C2H2-zf (CL0361) zf-BED; BED zinc finger (PF02892; HMM-score: 12.8)
    Globin (CL0090) Protoglobin; Protoglobin (PF11563; HMM-score: 12)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.046898
    • TAT(Tat/SPI): 0.045373
    • LIPO(Sec/SPII): 0.010528
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFNLKHDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNVCHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:
    NWMN_RS0291550S ribosomal protein L1  [1] (data from MRSA252)
    NWMN_RS02965elongation factor Tu  [1] (data from MRSA252)
    NWMN_RS04590NADH dehydrogenase  [1] (data from MRSA252)
    NWMN_RS1242050S ribosomal protein L4  [1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 1.2 1.3 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS12155&oldid=85457"