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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005864000
- symbol?: tcaR
- synonym:
- description?: transcriptional regulator
- transcriptional regulator
- transcriptional regulator TcaR
- MarR family transcriptional regulator
- TcaR transcription regulator
- teicoplanin resistance-associated transcriptional regulator TcaR
- teicoplanin resistance operon transcriptional regulator TcaR
- Teicoplanin-resistance associated HTH-type transcriptional regulator TcaR
- bicyclomycin resistance transcriptional regulator
- HTH-type transcriptional regulator tcaR
- marR family protein
- MarR family regulatory protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5937774..5938229
- synteny block?: BlockID0046090
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2296 (tcaR)
08BA02176:
C248_2402 (tcaR)
11819-97:
MS7_2375 (tcaR)
6850:
RSAU_002191 (tcaR)
71193:
ST398NM01_2410
ECT-R 2:
ECTR2_2217
ED133:
SAOV_2401c
ED98:
SAAV_2422 (tcaR)
HO 5096 0412:
SAEMRSA15_22550 (tcaR)
JH1:
SaurJH1_2427
JH9:
SaurJH9_2381
JKD6008:
SAA6008_02394 (tcaR)
JKD6159:
SAA6159_02261 (tcaR)
LGA251:
SARLGA251_21390 (tcaR)
M013:
M013TW_2315
MRSA252:
SAR2443 (tcaR)
MSHR1132:
SAMSHR1132_21820
MSSA476:
SAS2248
Mu3:
SAHV_2341 (tcaR)
Mu50:
SAV2357 (tcaR)
MW2:
MW2278 (tcaR)
RF122:
SAB2236c (tcaR)
ST398:
SAPIG2410
T0131:
SAT0131_02544
TCH60:
HMPREF0772_10835 (tcaR)
TW20:
SATW20_24880 (tcaR)
USA300_TCH1516:
USA300HOU_2339 (tcaR)
VC40:
SAVC_10641 (tcaR)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
N315 MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
Newman MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
USA300_FPR3757 MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQR
************************************************************
COL QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
N315 QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
Newman QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
USA300_FPR3757 QGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQD
************************************************************
COL ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
N315 ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
Newman ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
USA300_FPR3757 ITNDLNSEDIENVRQVLEVINHRIKTYSNHK
*******************************