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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2197 [new locus tag: SAUSA300_RS12115 ]
  • pan locus tag?: SAUPAN005695000
  • symbol: rplP
  • pan gene symbol?: rplP
  • synonym:
  • product: 50S ribosomal protein L16

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2197 [new locus tag: SAUSA300_RS12115 ]
  • symbol: rplP
  • product: 50S ribosomal protein L16
  • replicon: chromosome
  • strand: -
  • coordinates: 2366723..2367157
  • length: 435
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTTACTACCAAAACGTGTAAAATATCGTCGTCAACATCGTCCTAAAACAACTGGTCGT
    TCTAAAGGCGGTAACTACGTAACATTTGGTGAGTTTGGTTTACAAGCTACAACAACGTCT
    TGGATCACATCTCGTCAAATCGAATCTGCTCGTATAGCAATGACACGTTACATGAAACGT
    GGCGGGAAAGTTTGGATTAAAATCTTCCCACATACACCATATACTAAAAAACCTTTAGAA
    GTACGTATGGGTGCTGGTAAAGGTGCGGTTGAAGGCTGGATCGCAGTTGTTAAACCAGGT
    AGAATTTTATTCGAAGTTGCTGGCGTTTCTGAAGAAGTTGCGCGTGAAGCACTACGTTTA
    GCAAGTCACAAACTTCCAGTAAAAACTAAGTTTGTAAAACGTGAGGAATTGGGTGGTGAA
    ACAAATGAAAGCTAA
    60
    120
    180
    240
    300
    360
    420
    435

Protein[edit | edit source]

Protein Data Bank: 4WCE
Protein Data Bank: 4WF9
Protein Data Bank: 4WFA
Protein Data Bank: 4WFB
Protein Data Bank: 5HKV
Protein Data Bank: 5HL7
Protein Data Bank: 5LI0
Protein Data Bank: 5ND8
Protein Data Bank: 5ND9
Protein Data Bank: 5NRG
Protein Data Bank: 5TCU

General[edit | edit source]

  • locus tag: SAUSA300_2197 [new locus tag: SAUSA300_RS12115 ]
  • symbol: RplP
  • description: 50S ribosomal protein L16
  • length: 144
  • theoretical pI: 11.3014
  • theoretical MW: 16241.9
  • GRAVY: -0.513889

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL16 (TIGR01164; HMM-score: 200.8)
    and 1 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL16 (TIGR00279; HMM-score: 31.9)
  • TheSEED  :
    • LSU ribosomal protein L16p (L10e)
    Protein Metabolism Protein biosynthesis Ribosome LSU bacterial  LSU ribosomal protein L16p (L10e)
  • PFAM:
    no clan defined Ribosomal_L16; Ribosomal protein L16p/L10e (PF00252; HMM-score: 173.9)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.0153
    • TAT(Tat/SPI): 0.00641
    • LIPO(Sec/SPII): 0.006072
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGETNES

Experimental data[edit | edit source]

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

Relevant publications[edit | edit source]