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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02786
  • pan locus tag?: SAUPAN006071000
  • symbol: SAOUHSC_02786
  • pan gene symbol?: —
  • synonym:
  • product:

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: pseudogene
  • locus tag: SAOUHSC_02786
  • symbol: SAOUHSC_02786
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 2558631..2559955
  • length: 1325
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAGTCAAACGGAATATCAAATAAAATCTGGCAATATAAAAGGTAACTCTGAAGAAACA
    AGTACAGTATCTAATATAAGTTATGAAATAGAAAACGCAAATAACAGTGGTTTAAAACAA
    AATAAAATTGATAAACAAATTAAAAAGTTACAAGAAAAAAATAAATTCCCTAAAAATCTT
    TCATATCTTAAAAGTTATACGGACCCCAAAACAGGCACGACTACAAGCGCCTTTTTAAAT
    AAAGACACTGGCAAAGTTACTTTAGGTATGACAGGTACTAATGTACACAAAGACGCAATA
    TTAAAACAAACATTTGGTGTTCCTTCTTATCAAGGATATATAGACGTGAGTGAAACGCTA
    AAAGATATTGGGGCCGATGTCAATATTGGCCTTCATTCCGTCACAGATAAAGATCCACAT
    TATAAAAATACCCAAGACTTTATCAAAAATATCAAAAAAGACTATGATATTGATATTATT
    ACCGGACATTCGCTGGGCGGTAGAGATGCGATGATTTTAGGTATGAGTAATGATATTAAA
    CATATCGTTGTGTATAATCCAGCTCCATTAGCGATCAAAGATGTGAGCGGCCTTTATGCC
    GATCAAGAAGAACTTAAAAAATTGATTGAAAAGTACGATGGTCACATTGTAAGATTTGTG
    TCTGATGAAGACGAATTAGATGCAGGTGTCCGCAATCATTTATATGAAACTGCTGGAGAA
    AAAATAGTACTTAAAAATGGAGAAGGCCATGCAATGAGTGGTATTTTAATGAGCAGAACA
    CAGGCTATAATCTTAGCTGAATTAAACAAAGTTAAAGGCTACCAAGACGAAAATAATAAA
    GCATTAAAATCCGTTCGTAAACAAACGAGGCATAGATTACATAAAGTAGAGACGTTAAGA
    GCGAATTGGATTCAAACAACGGGTGGATCACTCTCTTCCTCCCAACAACAATTATTAGAA
    GCTTTAACAGCACTAACCATTGCCGAAGGCTTAAATCAATTAGTGAATGAAGAAAGCCAA
    CATTTGAAAAAATGTATCACGCGATGGCACATAAATTTGGAGACAACTGGAAAAAAGCGC
    AAGAAGTTGGAAATGAAATTGGTGAAAAATTAACCTCTGAAGAGGTTATAGATGAATTAA
    GAAAAGGTGGCGCGTATGAAAGTAAACTTGAAACAGATCCCAAAAGAAAAATTGATGATA
    AGATAAAGAAATTAAATGATGTTTATAAAAATTGTAATGGCTATATCGCAAAAATTAAAC
    AGAGTATCGAAGCAATTGTTTCTAATGACCAAATGTTAGCGAGCCAGATTGATGGGATGA
    TGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1325

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02786
  • symbol: SAOUHSC_02786
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • hypothetical protein
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt: Q2FVC7 UniProt
  • STRING: 93061.SAOUHSC_02786 STRING

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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