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Summary[edit source | edit]

  • pan ID?: SAUPAN001133000
  • symbol?: tarI
  • description?: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

      descriptions from strain specific annotations:

    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
    • ribitol-5-phosphate cytidylyltransferase
    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2, IspD_2
    • 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, putative
    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEPcytidylyltransferase) (MCT)
    • D-ribitol-5-phosphate cytidylyltransferase
  • strand?: +
  • coordinates?: 1402793..1403509
  • synteny block?: BlockID0006530
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0240 (ispD)
    N315:
    SA0245 (ispD)
    NCTC8325:
    Newman:
    NWMN_0189 (ispD)
    USA300_FPR3757:
    04-02981:
    SA2981_0255
    08BA02176:
    C248_0243 (ispD)
    11819-97:
    MS7_0245 (ispD2)
    71193:
    ST398NM01_0268
    ECT-R 2:
    ECTR2_216
    ED133:
    SAOV_0194
    ED98:
    SAAV_0223 (ispD_1)
    HO 5096 0412:
    SAEMRSA15_02140
    JH1:
    SaurJH1_0246 (ispD)
    JH9:
    SaurJH9_0240 (ispD)
    JKD6008:
    SAA6008_00229 (ispD_2)
    JKD6159:
    SAA6159_00232 (ispD_2)
    LGA251:
    SARLGA251_02190 (ispD2)
    M013:
    M013TW_0236
    MRSA252:
    SAR0252 (ispD)
    MSHR1132:
    SAMSHR1132_02230
    MSSA476:
    SAS0232 (ispD)
    Mu3:
    SAHV_0254 (ispD)
    Mu50:
    SAV0255 (ispD)
    MW2:
    MW0231 (ispD)
    RF122:
    SAB0194 (ispD)
    ST398:
    SAPIG0268
    T0131:
    SAT0131_00248
    TCH60:
    HMPREF0772_10247 (ispD)
    TW20:
    SATW20_02570 (ispD2)
    USA300_TCH1516:
    USA300HOU_0266 (ispD)
    VC40:
    SAVC_01015 (ispD)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
    N315            MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
    NCTC8325        MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
    Newman          MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
    USA300_FPR3757  MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
                    ************************************************************

    COL             TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
    N315            TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
    NCTC8325        TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
    Newman          TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
    USA300_FPR3757  TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
                    ************************************************************

    COL             IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
    N315            IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
    NCTC8325        IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
    Newman          IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
    USA300_FPR3757  IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
                    ************************************************************

    COL             YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
    N315            YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
    NCTC8325        YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
    Newman          YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
    USA300_FPR3757  YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
                    **********************************************************