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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001246000
  • symbol?: int1
  • description?: phage integrase

      descriptions from strain specific annotations:

    • phage integrase
    • phage integrase family protein
    • prophage L54a, integrase
    • pathogenicity island protein, integrase
    • phiSLT ORF401-like protein, integrase
    • bacteriophage integrase
  • strand?: +
  • coordinates?: 1533433..1602641
  • synteny block?: BlockID0007570
  • occurrence?: in 25% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0318 (int)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    SaurJH1_0311
    JH9:
    SaurJH9_0304
    JKD6008:
    JKD6159:
    SAA6159_01417
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_03260
    USA300_TCH1516:
    USA300HOU_1490
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
    NCTC8325        MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
    USA300_FPR3757  MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
                    **:*********************************************************

    COL             NKSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK
    NCTC8325        NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIKNIKRYCSENLLLNKLDTK
    USA300_FPR3757  NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
                    **************************** *:***:*:* **:***: .*:******:***

    COL             YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE
    NCTC8325        YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
    USA300_FPR3757  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
                    *** ***:**::** ***.****.** **************::*..*.:**: *******

    COL             KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
    NCTC8325        KDESKMYNYLEMNQVLQIRDHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKD
    USA300_FPR3757  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
                    *:*:********:**:****.*****::: * ***:*. :************* *** **

    COL             VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ
    NCTC8325        IDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
    USA300_FPR3757  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
                    :** ****:*.******* : ***:****** .***.*:**** .:::***:**** :::

    COL             WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI
    NCTC8325        WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
    USA300_FPR3757  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
                    *:.*********** :***: ..:*   *..::::**:********:*****:**.***:

    COL             SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLVY
    NCTC8325        SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
    USA300_FPR3757  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
                    ***********.******::************ ****::