PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001246000
• symbol^?: int1
• synonym:
• description^?: site-specific integrase

  descriptions from strain specific annotations:

  • site-specific integrase
  • bacteriophage integrase
  • phiSLT ORF401-like protein, integrase
  • prophage L54a, integrase
  • pathogenicity island protein, integrase
  • phage integrase
  • phage integrase family protein
• strand^?: +
• coordinates^?: 1533433..1602641
• synteny block^?: BlockID0007570
• occurrence^?: in 24% of 33 strains

⊟Orthologs

COL:
SACOL0318 (int)
N315:
—
NCTC8325:
SAOUHSC_01582
Newman:
—
USA300_FPR3757:
SAUSA300_1438
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0311
JH9:
SaurJH9_0304
JKD6008:
—
JKD6159:
SAA6159_01417
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_03260
USA300_TCH1516:
USA300HOU_1490
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
  NCTC8325        MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
  USA300_FPR3757  MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
                  **:*********************************************************
  
  COL             NKSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK
  NCTC8325        NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIKNIKRYCSENLLLNKLDTK
  USA300_FPR3757  NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
                  **************************** *:***:*:* **:***: .*:******:***
  
  COL             YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE
  NCTC8325        YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
  USA300_FPR3757  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
                  *** ***:**::** ***.****.** **************::*..*.:**: *******
  
  COL             KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
  NCTC8325        KDESKMYNYLEMNQVLQIRDHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKD
  USA300_FPR3757  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
                  *:*:********:**:****.*****::: * ***:*. :************* *** **
  
  COL             VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ
  NCTC8325        IDLLNKTINITGTIHRIKYEKGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
  USA300_FPR3757  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
                  :** ****:*.******* : ***:****** .***.*:**** .:::***:**** :::
  
  COL             WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI
  NCTC8325        WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
  USA300_FPR3757  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
                  *:.*********** :***: ..:*   *..::::**:********:*****:**.***:
  
  COL             SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLVY
  NCTC8325        SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
  USA300_FPR3757  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
                  ***********.******::************ ****::