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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0531 [new locus tag: SAUSA300_RS02840 ]
  • pan locus tag?: SAUPAN002318000
  • symbol: SAUSA300_0531
  • pan gene symbol?: rpsG
  • synonym:
  • product: 30S ribosomal protein S7

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0531 [new locus tag: SAUSA300_RS02840 ]
  • symbol: SAUSA300_0531
  • product: 30S ribosomal protein S7
  • replicon: chromosome
  • strand: +
  • coordinates: <593924..594304
  • length: 381
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTTAGATGGTAAACGTGGAACAGCACAAAGAATTCTTTATTCAGCATTCGACCTAGTT
    GAACAACGCAGTGGTCGTGATGCATTAGAAGTATTCGAAGAAGCAATCAACAACATTATG
    CCAGTATTAGAAGTTAAAGCTCGTCGCGTAGGTGGTTCTAACTATCAAGTACCAGTAGAA
    GTTCGTCCAGAGCGTCGTACTACTTTAGGTTTACGTTGGTTAGTTAACTATGCACGTCTT
    CGTGGTGAAAAAACGATGGAAGATCGTTTAGCTAACGAAATTTTAGATGCAGCAAATAAT
    ACAGGTGGTGCCGTTAAGAAACGTGAGGACACTCACAAAATGGCTGAAGCAAACAAAGCA
    TTTGCTCACTACCGTTGGTAA
    60
    120
    180
    240
    300
    360
    381

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_0531 [new locus tag: SAUSA300_RS02840 ]
  • symbol: SAUSA300_0531
  • description: 30S ribosomal protein S7
  • length: 126
  • theoretical pI: 10.0587
  • theoretical MW: 14417.3
  • GRAVY: -0.648413

Function[edit source | edit]

  • TIGRFAM:
    Genetic information processingProtein synthesisRibosomal proteins: synthesis and modificationribosomal protein uS7 (TIGR01029; HMM-score: 196.9)
    and 1 more
    Genetic information processingProtein synthesisRibosomal proteins: synthesis and modificationribosomal protein uS7 (TIGR01028; HMM-score: 58.2)
  • TheSEED:  
    Protein MetabolismProtein biosynthesisRibosome SSU bacterial SSU ribosomal protein S7p (S5e) 
    and 1 more
    VirulenceVirulence - no subcategoryMycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins) SSU ribosomal protein S7p (S5e) 
  • PFAM:
    no clan definedRibosomal_S7; Ribosomal protein S7p/S5e (PF00177; HMM-score: 181.7)

Structure, modifications & interactions[edit source | edit]

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.134
    • Ymax_pos: 29
    • Cmax: 0.163
    • Cmax_pos: 29
    • Smax: 0.137
    • Smax_pos: 28
    • Smean: 0.085
    • D: 0.115
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLDGKRGTAQRILYSAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J. Proteome Res.: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

Relevant publications[edit source | edit]