PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary

• organism: Staphylococcus aureus JSNZ
• locus tag: JSNZ_002629
• pan locus tag^?: SAUPAN006370000
• symbol: JSNZ_002629
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: JSNZ_002629
• symbol: JSNZ_002629
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 2635144..2635602
• length: 459
• essential: unknown other strains

⊟Accession numbers

• Gene ID:
• RefSeq:
• BioCyc:
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  
  TTGAAAAAACTTCTTATTACCATCGTAATTATCGTATTAATCGGAGCACTTGGGTTCGCA
  ATTTATGCTGCAATAAATCATTCTACATCATCAAGTAATAACCAAGAACAAGAAAATAAA
  GCTACGCATAAAAAGACAGAAACCGAAGAAAATGATCAACAAGATGATAGTGCAAACAAA
  GCAGATAAAAATCAAAATAATGGCAATAACGATACTAATGACAATCAACCATCTTCACCG
  TCAAATGTTCCTAACAACCATTCAACAGTACCATCGAATACGCAACCAGCTCAGCCAAAA
  GACTCAAATTCAAATAAAAATAATACTCACGATGGTGGCAGTCAATCGTCAACAAACAAC
  CAAAATAATCAACAACAGAACACACCACCTGCTAATAAATCAAATAATACCAATACGCCT
  TCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAA
  60
  120
  180
  240
  300
  360
  420
  459
  

⊟Protein

⊟General

• locus tag: JSNZ_002629
• symbol: JSNZ_002629
• description: hypothetical protein
• length: 152
• theoretical pI: 6.97047
• theoretical MW: 16388.2
• GRAVY: -1.50329

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Cell division cell division protein ZipA (TIGR02205; HMM-score: 19.9)
  and 11 more
  Metabolism Transport and binding proteins Cations and iron carrying compounds cation transporter family protein (TIGR00860; HMM-score: 14.8)
  heavy metal sensor kinase (TIGR01386; EC 2.7.13.3; HMM-score: 13)
  Metabolism Energy metabolism Electron transport sulfocyanin (TIGR03094; HMM-score: 12.2)
  Genetic information processing Transcription Degradation of RNA ribonuclease Y (TIGR03319; EC 3.1.-.-; HMM-score: 12.1)
  Genetic information processing Mobile and extrachromosomal element functions Plasmid functions entry exclusion protein TrbK (TIGR04361; HMM-score: 11.3)
  two transmembrane protein (TIGR04527; HMM-score: 11.1)
  mycoides cluster lipoprotein, LppA/P72 family (TIGR03490; HMM-score: 9.9)
  Cellular processes Cellular processes Pathogenesis putative immunoglobulin-blocking virulence protein (TIGR04526; HMM-score: 8.6)
  Cellular processes Cellular processes Sporulation and germination stage III sporulation protein AG (TIGR02830; HMM-score: 7.3)
  Metabolism Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, Trk family (TIGR00934; HMM-score: 5.5)
  Metabolism Transport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 4.6)
• TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
• PFAM:
  no clan defined DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 20.9)
  DUF4083; Domain of unknown function (DUF4083) (PF13314; HMM-score: 18.5)
  and 16 more
  SARAF; SOCE-associated regulatory factor of calcium homoeostasis (PF06682; HMM-score: 15.5)
  TSPAN_4TM-like (CL0347) Tetraspanin; Tetraspanin family (PF00335; HMM-score: 14.3)
  no clan defined PsaL; Photosystem I reaction centre subunit XI (PF02605; HMM-score: 12.3)
  UPF0767; UPF0767 family (PF15990; HMM-score: 12.2)
  FeoB_associated; FeoB-associated Cys-rich membrane protein (PF12669; HMM-score: 11.8)
  Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 10.6)
  Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 10.6)
  DMT (CL0184) TMEM144; Transmembrane family, TMEM144 of transporters (PF07857; HMM-score: 10.5)
  no clan defined Gastrin; Gastrin/cholecystokinin family (PF00918; HMM-score: 8.2)
  TSPAN_4TM-like (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 7.7)
  GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 7.2)
  no clan defined CD34_antigen; CD34/Podocalyxin family (PF06365; HMM-score: 7)
  FAM176; FAM176 family (PF14851; HMM-score: 7)
  RBM_T3SS-Flag (CL0873) SpoIIIAH; SpoIIIAH-like protein (PF12685; HMM-score: 6.9)
  GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 6.8)
  no clan defined DUF6080; Family of unknown function (DUF6080) (PF19558; HMM-score: 6.6)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Extracellular
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.05
  • Cellwall Score: 0.82
  • Extracellular Score: 9.13
  • Internal Helix: 1
• DeepLocPro: Extracellular
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.4245
  • Cell wall & surface Score: 0.0015
  • Extracellular Score: 0.574
• LocateP:
• SignalP: Signal peptide SP(Sec/SPI) length 23 aa
  • SP(Sec/SPI): 0.901574
  • TAT(Tat/SPI): 0.001978
  • LIPO(Sec/SPII): 0.077133
  • Cleavage Site: CS pos: 23-24. IYA-AI. Pr: 0.4479
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI:
• RefSeq:
• UniProt:

⊟Protein sequence

• MKKLLITIVIIVLIGALGFAIYAAINHSTSSSNNQEQENKATHKKTETEENDQQDDSANKADKNQNNGNNDTNDNQPSSPSNVPNNHSTVPSNTQPAQPKDSNSNKNNTHDGGSQSSTNNQNNQQQNTPPANKSNNTNTPSKQTPQAQSPKN

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications