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COLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 23-MAY-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_pUSA030020 [new locus tag: SAUSA300_RS14835 ]
  • pan locus tag?:
  • symbol: traK
  • pan gene symbol?: —
  • synonym:
  • product: transfer complex protein TraK

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_pUSA030020 [new locus tag: SAUSA300_RS14835 ]
  • symbol: traK
  • product: transfer complex protein TraK
  • replicon: pUSA03
  • strand: +
  • coordinates: 19993..21633
  • length: 1641
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGACTACACTTTTAGGCGAATTAGAAAGTAAAGCAACTTCTATAAATAAAAAGAATCTA
    GTAATACAAGATTTTGATACTAAATGCCCTAATAGAAATATATTTGTGGTAGGAGGGCCA
    GGTTCCTATAAGTCAGCTGGGTATGTTATTCCTAATGTTATTGTTAAAAATCAACAATCA
    ATAGTTGTAACTGACCCTAGTGGCGAAGTTTATGAAAAAACATCTAATATTAAACGCATG
    CAAGGTTTTGATGTTAGAGTAGTAAATTTCAAAAACTTTTTAGCCTCTGATAGACAAAAC
    TTTTTTGATTATATTGATAAAGATTCTGATTGTTCAATAGTTGCTGAATTAATTATTAAA
    TCAGCTGGGGATTCTAAAATAAATAAAGACGTATGGTATAAAGCCTCTGTAGGATTATTA
    AATTCATTGCTTTTATACGCTAAATATGAATTTGAACCAGAAAAACGAACTATAGGAAAC
    ATTATTAAATTTATTCAAAATAACAAACCTAATCAAGATGAAGAAGGATCAGTTGAATTA
    GATAAACGCTTTAATGAATTATCTAAAGACCACCCAGCTAGAGAAAGTTATGAATTTGGT
    TTTGCAGTATCAGAAGGAAGAACAAGAGCAAGTATTATACTAACCTTTGTAGCCGATTTA
    CGAAATTACATTGATAACGAAATTAGAAGTTATACAAGCGATTCTGATTTTGATTTACGA
    GATGTAGGATTAAGAAAAACTATTATATATGTAATGTTGCCAGTTTTGGGGAACACTGTT
    CAATCACTTTCTAGTTTATTCTTCTCTCAAATGTTCCAACAGCTATATAGGTTAGGGGAC
    GAAAACGGTGCTAGACTTCCAGTCCCAGTAGATTTTTTACTAGACGAATGGCCAAATATC
    GGCGCAATACCAGACTATGAAGAAACTTTAGCAACTTGTCGTAAGTATGGTATTAGTATC
    ACAACAATTGTTCAATCTATATCACAAGCAGTAGATAAATATAATAAAGATAAAGCTAAC
    GCTATTATAGGTAACCACGCAGTTATTTTATGTTTAGGTAATGTGAATAATGATACAGCA
    AAATATATAAAAGAAGAATTAGGTAATGCTACTGTAGAGTTTGAAACAAGTAGTGAAGGT
    TCTTCTAGTGGTAAAGATAGCAGAAGTAAATCATCAAATAAAAATGTAAGCTACACTGGA
    AGGGCATTACTAAATGAAGATGAAATAAGTAATATGCAACAGGATAAAGCTATTCTTATA
    ACTAAAAATAGAAATCCTAAAATTATTAAAAAGTTAGCATATTTTAAAATGTTCCCTAAT
    TTAACAGAAACGTATATAGCACCTCAAAACGAATACAAACGTAAAAAAAACCAGTCTATG
    ATTGATAAGCATAATAGATTAAGAGAAGAATGGGATAAAAAACAAGAGAAAAATAAACAG
    CAAAAACTAGAAGAATATAAAGAAGAACAAAGACAGAAAGAGTTAGAGAAAGAACAACAA
    CCACAAGAAGAACAACAAAATGAGAAAGTAAAAGAAAGTAAAGACAAAAACGATCAAGAA
    GATAAGAAAGACGAGCAACAAAAAATTAATGATTCTAAGAAAGCATTCTACGAAAAATTA
    AAACAAAAACAAGCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1641


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_pUSA030020 [new locus tag: SAUSA300_RS14835 ]
  • symbol: TraK
  • description: transfer complex protein TraK
  • length: 546
  • theoretical pI: 7.87684
  • theoretical MW: 62672.1
  • GRAVY: -0.789927

⊟Function[edit | edit source]

  • TIGRFAM:
    Ti-type conjugative transfer system protein TraG (TIGR02767; HMM-score: 87)
    and 2 more
    type IV conjugative transfer system coupling protein TraD (TIGR02759; HMM-score: 46.2)
    Genetic information processing Mobile and extrachromosomal element functions Other conjugative coupling factor TraD, SXT/TOL subfamily (TIGR03743; HMM-score: 42.8)
  • TheSEED  :
    • protein TrsK
  • PFAM:
    P-loop_NTPase (CL0023) T4SS-DNA_transf; Type IV secretory system Conjugative DNA transfer (PF02534; HMM-score: 525.5)
    and 4 more
    TraG-D_C; TraM recognition site of TraD and TraG (PF12696; HMM-score: 110.2)
    TrwB_AAD_bind; Type IV secretion-system coupling protein DNA-binding domain (PF10412; HMM-score: 71)
    no clan defined HXXSHH; Protein of unknown function (DUF1552) (PF07586; HMM-score: 9.5)
    Piezo_TM1-24; Piezo TM1-24 (PF24871; HMM-score: 5.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4591
    • Cytoplasmic Membrane Score: 0.1479
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.3923
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.03238
    • TAT(Tat/SPI): 0.001078
    • LIPO(Sec/SPII): 0.004398
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTLLGELESKATSINKKNLVIQDFDTKCPNRNIFVVGGPGSYKSAGYVIPNVIVKNQQSIVVTDPSGEVYEKTSNIKRMQGFDVRVVNFKNFLASDRQNFFDYIDKDSDCSIVAELIIKSAGDSKINKDVWYKASVGLLNSLLLYAKYEFEPEKRTIGNIIKFIQNNKPNQDEEGSVELDKRFNELSKDHPARESYEFGFAVSEGRTRASIILTFVADLRNYIDNEIRSYTSDSDFDLRDVGLRKTIIYVMLPVLGNTVQSLSSLFFSQMFQQLYRLGDENGARLPVPVDFLLDEWPNIGAIPDYEETLATCRKYGISITTIVQSISQAVDKYNKDKANAIIGNHAVILCLGNVNNDTAKYIKEELGNATVEFETSSEGSSSGKDSRSKSSNKNVSYTGRALLNEDEISNMQQDKAILITKNRNPKIIKKLAYFKMFPNLTETYIAPQNEYKRKKNQSMIDKHNRLREEWDKKQEKNKQQKLEEYKEEQRQKELEKEQQPQEEQQNEKVKESKDKNDQEDKKDEQQKINDSKKAFYEKLKQKQAK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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