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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 23-MAY-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
- pan locus tag?:
- symbol: traG
- pan gene symbol?: —
- synonym:
- product: transfer complex protein TraG
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
- symbol: traG
- product: transfer complex protein TraG
- replicon: pUSA03
- strand: +
- coordinates: 15827..16903
- length: 1077
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3912758 NCBI
- RefSeq: YP_492702 NCBI
- BioCyc: see SAUSA300_RS14815
- MicrobesOnline: 1291495 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGTGGAGTGCTATTGCTAAAGGAATAACAATGCTGATGAAGAAAAAAGCATTATCCAAA
ATATTAAAACCAGTAATAGCTATAGTAATAGGCTTTTTCCTTCTTATTTTTATAATGATT
GCTTATCTAGTAGGATCTTTCACTAAAGAAATTAATGAGAGTGGCGAACAAAAAATGAAA
GAGGCTGAATCAACAGCAACAGGTGCGTGTACTGGTGGAAGTGTTGACGGTTCGGGTATC
TCTGCTTTTGAAAAAAACGCCAAAGGTGGCGCATTAGAAGGTAAAGGTAAGGATATGGTT
AAAATTGCTAAAAAAAATAAAATACCACCAAAATTATTTATAGCAATTGTAGCTTCTGAG
TCAGAATGGGGAAGAGGGGCAAATGCAACAAAACAAAAAAACCCCCTATCTATAATGGGG
GCTGGCCCTCTACAAGTTTACCCTTCAATTGAAGAAGGACTTGATAAAGGTGCAAAAAAT
TTATATGACTTATACATTTCTGAAGGTTTGACAACTCCCGAGAAAATCGGGCCAAAATAC
GCACCAGTAGGCGCTAGTAATGACCCAGATGACTTAAATAGTAACTGGGTACCTACAGTT
AAGAAAATCATGAAGTCATTCGGTGGCAAAGAGGCTAAATGTTCTACTGAAAGCAGTGGT
GGAGGTTCAGACGGAAAAGGATTTGATTTTAAAGGAGAATTCCCTAAACCTGACAAATCG
AAATATAACGGTCAATCTTATCCATGGGGACAGTGTACTTGGTATGTACATCAACGTAGA
AAAGAAATTGGCAAACCAGTACCTTTAACTTGGGGTAATGGTGGGGACTGGGGCGATAAT
GCAAAAGCGCAAGGCTGGGAAGTAGGTAGTAAGCCGAAAGCTGGCGCTGGCGCCTCTGTA
AAACCCGGTAACTTTGGCGCACCACCACCGTATGGACACATCATGTTTGTCGAAAAAGTT
AAAAAAGACGGTGGAATTGTAGTTAGTGAGGCCAATGTAAAAGGCCTAGGAGTTATAAGT
TCAAGAGAATTTTCAAAAGCAGAAACACAACGTATGCAATTTATTTATGATAAGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_pUSA030016 [new locus tag: SAUSA300_RS14815 ]
- symbol: TraG
- description: transfer complex protein TraG
- length: 358
- theoretical pI: 10.0211
- theoretical MW: 38301.8
- GRAVY: -0.391899
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination putative sporulation protein YtaF (TIGR02840; HMM-score: 13.3)Transport and binding proteins Amino acids, peptides and amines oligopeptide transporter, OPT family (TIGR00733; HMM-score: 11)
- TheSEED :
- Secretory antigen SsaA-like protein transposon-related
- PFAM: Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 58.1)and 2 moreLysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 39.1)no clan defined T2SSF; Type II secretion system (T2SS), protein F (PF00482; HMM-score: 7.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0.03
- Cytoplasmic Membrane Score: 0.77
- Cellwall Score: 9.14
- Extracellular Score: 0.06
- Internal Helix: 1
- LocateP: Lipid anchored
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Sec-(SPII)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: ATGACTG
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006407
- TAT(Tat/SPI): 0.000274
- LIPO(Sec/SPII): 0.002706
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MWSAIAKGITMLMKKKALSKILKPVIAIVIGFFLLIFIMIAYLVGSFTKEINESGEQKMKEAESTATGACTGGSVDGSGISAFEKNAKGGALEGKGKDMVKIAKKNKIPPKLFIAIVASESEWGRGANATKQKNPLSIMGAGPLQVYPSIEEGLDKGAKNLYDLYISEGLTTPEKIGPKYAPVGASNDPDDLNSNWVPTVKKIMKSFGGKEAKCSTESSGGGSDGKGFDFKGEFPKPDKSKYNGQSYPWGQCTWYVHQRRKEIGKPVPLTWGNGGDWGDNAKAQGWEVGSKPKAGAGASVKPGNFGAPPPYGHIMFVEKVKKDGGIVVSEANVKGLGVISSREFSKAETQRMQFIYDK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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